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The map label for this gene is ybeF [H]

Identifier: 218688452

GI number: 218688452

Start: 647595

End: 647924

Strand: Reverse

Name: ybeF [H]

Synonym: ECED1_0625

Alternate gene names: 218688452

Gene position: 647924-647595 (Counterclockwise)

Preceding gene: 218688453

Following gene: 218688451

Centisome position: 12.44

GC content: 44.24

Gene sequence:

>330_bases
GTGGATAGTAATAATCAAATTGAACCCTGTTTAAGCAGAAAATCGTCAGAAGGTAAACCACAAATATTTACAACCTTACG
AAATATTGATCTTACCCTTCTGACTATTTTGAAGTTGCATATGTCCATAAAGGAATCGTTAATGCAGCGAAAGTGCTTAA
TCTGCCCCCCCTCGGTCGGAGCCCTGGTCCTTCCTGTCATCTATCGGGCGATTAAAACTCACTATCCACAGCTTTTACTG
CGCAACCCGCCCATCGGCGGCGCGGAAAACCAACTCAGTCAGTTTCAAACCGATCTCATCACCGATAACATGTTTTGCAC
AGGACCATAG

Upstream 100 bases:

>100_bases
AATTACCATGGTGAGCAAAAGCGTTCCATCCCAATTAGACATAAGATTATTGTAATTTTTTTAAATATTATTTTTTCATG
AATGAAATTGGAGTAAGTGC

Downstream 100 bases:

>100_bases
ATGTTATCCGTAATGCATTTTGAAAAAGTATTGTTACAGCCAGATCACAGCGCAGAACGATAAAATGGCACAATCCAACA
ACAATTTTACATTTTCGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLTLLTILKLHMSIKESLMQRKCLICPPSVGALVLPVIYRAIKTHYPQLLL
RNPPIGGAENQLSQFQTDLITDNMFCTGP

Sequences:

>Translated_109_residues
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLTLLTILKLHMSIKESLMQRKCLICPPSVGALVLPVIYRAIKTHYPQLLL
RNPPIGGAENQLSQFQTDLITDNMFCTGP
>Mature_109_residues
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLTLLTILKLHMSIKESLMQRKCLICPPSVGALVLPVIYRAIKTHYPQLLL
RNPPIGGAENQLSQFQTDLITDNMFCTGP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=61, Percent_Identity=83.6065573770492, Blast_Score=103, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 12224; Mature: 12224

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLTLLTILKLHMSIKESLMQRKCLICPPSVG
CCCCCCCCHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
ALVLPVIYRAIKTHYPQLLLRNPPIGGAENQLSQFQTDLITDNMFCTGP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure
MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLTLLTILKLHMSIKESLMQRKCLICPPSVG
CCCCCCCCHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
ALVLPVIYRAIKTHYPQLLLRNPPIGGAENQLSQFQTDLITDNMFCTGP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444795; 8905232; 9278503 [H]