Click here to switch to the map view.

The map label for this gene is citD [H]

Identifier: 218688441

GI number: 218688441

Start: 637635

End: 637931

Strand: Reverse

Name: citD [H]

Synonym: ECED1_0614

Alternate gene names: 218688441

Gene position: 637931-637635 (Counterclockwise)

Preceding gene: 218688442

Following gene: 218688440

Centisome position: 12.25

GC content: 55.89

Gene sequence:

>297_bases
ATGAAAATAAACCAGCCCGCCGTTGCAGGCACCCTTGAGTCTGGGGATGTGATGATACGCATCGCCCCACTCGATACGCA
GGATATCGACCTGCAAATCAACAGCAGCGTTGAGAAACAGTTTGGCGATGCAATTCGCACCACCATTCTGGAAGTTCTCG
CCCGCTACAACGTGCGCGGCGTACAGCTGAATGTCGATGACAAAGGCGCACTGGACTGCATTTTACGTGCACGACTGGAA
GCCCTGCTGGCACGCGCCAGCGGTATCCCGGCTCTGCCATGGGAGGATTGCCAATGA

Upstream 100 bases:

>100_bases
TCCCTGCAGTCACGCTGCATTATTTGCAGAACCTGCTTGAGCACTCCCGCCAGGACGCGGCAGCTCGTCAAAAGACCCCC
GCATGAGAAACAGGTGAAAA

Downstream 100 bases:

>100_bases
TTTCCGCTTCGCTGCAACAACGTAAAACTCGCACCCGCCGCAGTATGTTGTTTGTGCCTGGTGCTAATGCCGCGATGGTC
AGCAACTCCTTCATCTACCC

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain [H]

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILEVLARYNVRGVQLNVDDKGALDCILRARLE
ALLARASGIPALPWEDCQ

Sequences:

>Translated_98_residues
MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILEVLARYNVRGVQLNVDDKGALDCILRARLE
ALLARASGIPALPWEDCQ
>Mature_98_residues
MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILEVLARYNVRGVQLNVDDKGALDCILRARLE
ALLARASGIPALPWEDCQ

Specific function: Covalent carrier of the coenzyme of citrate lyase [H]

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family [H]

Homologues:

Organism=Escherichia coli, GI1786834, Length=98, Percent_Identity=98.9795918367347, Blast_Score=196, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006495
- InterPro:   IPR009662
- ProDom:   PD015389 [H]

Pfam domain/function: PF06857 MdcD [H]

EC number: 4.1.3.6

Molecular weight: Translated: 10703; Mature: 10703

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILEVLARYNVRG
CCCCCCCCEEEECCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCE
VQLNVDDKGALDCILRARLEALLARASGIPALPWEDCQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDAIRTTILEVLARYNVRG
CCCCCCCCEEEECCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCE
VQLNVDDKGALDCILRARLEALLARASGIPALPWEDCQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA