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The map label for this gene is ybcF [H]

Identifier: 218688379

GI number: 218688379

Start: 564530

End: 565423

Strand: Direct

Name: ybcF [H]

Synonym: ECED1_0540

Alternate gene names: 218688379

Gene position: 564530-565423 (Clockwise)

Preceding gene: 218688378

Following gene: 218688385

Centisome position: 10.84

GC content: 57.61

Gene sequence:

>894_bases
ATGAAAACACTGGTTGTGGCTCTTGGGGGCAACGCCTTACTCCAGCGCGGTGAGGCGCTGACGGCAGAAAATCAATATCG
CAATATTGCCAGTGCTGTGCCCGCGCTGGCGCGCCTGGCCCGTTCTTATCGGCTGGCGATTGTTCACGGCAACGGGCCGC
AGGTGGGGCTGCTGGCGTTACAGAATCTGGCGTGGAAAGAGGTAGAACCGTATCCGCTGGATGTACTGGTGGCGGAAAGC
CAGGGGATGATTGGCTATATGCTGGCGCAGAGCTTGAGCGCACAGCCGCAGATGCCGCCTGTCACGACGGTGCTGACGCG
CATTGAGGTTTCGCCTGATGATCCGGCGTTTTTACAGCCAGAGAAATTTATTGGTCCGGTTTATCAGCCAGAAGAACAAG
AGGCACTGGAAGCGGCTTACGGCTGGCAGATGAAACGTGATGGTAAATATTTACGCCGGGTGGTGGCGTCTCCGCAACCG
CGTAAAATTCTCGACAGCGAAGCCATCGAGTTGTTGCTCAAAGAGGGGCATGTGGTGATTTGCAGTGGCGGCGGCGGTGT
GCCTGTGGCGGAAGACGGGGCTGGGAGTGAAGCGGTGATTGATAAAGATCTCGCCGCTGCGTTGCTCGCCGAGCAGATTA
ATGCCGATGGACTGGTGATCCTCACCGATGCTGATGCGGTATATGAAAACTGGGGAACGCCGCAGCAACGTGCCATTCGC
CATGCCACACCGGATGAGTTAGCGCCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAAGGTAACGGCGGTGAGTGGCTA
TGTCAGAAGCCGTGGTAAACCCGCGTGGATTGGGGCGTTATCGCGGATTGAAGAGACGCTGGCGGGCGAAGCGGGGACTT
GTATTTCGCTGTAG

Upstream 100 bases:

>100_bases
CCACAGCGGCGATCGATTCGCTGCTGGCGCTGGGGCATACGTCAGGGGCCGATACGCTGCTGGGGTTCTGGCTTGGCCAA
CAATTATTACAAGGAAAACC

Downstream 100 bases:

>100_bases
TGATGGGCACCAGGCAATTGGCACATCTAGCCTGATGCGATGCTGGCGCGTCTTATCAGGCCTACAGTCGGTGTTGGAGC
GGTGGGCCGGATAAGGCGTT

Product: carbamate kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAES
QGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQP
RKILDSEAIELLLKEGHVVICSGGGGVPVAEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
HATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL

Sequences:

>Translated_297_residues
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAES
QGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQP
RKILDSEAIELLLKEGHVVICSGGGGVPVAEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
HATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>Mature_297_residues
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAES
QGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQP
RKILDSEAIELLLKEGHVVICSGGGGVPVAEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
HATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL

Specific function: Arginine degradation via arginine deiminase; third step. [C]

COG id: COG0549

COG function: function code E; Carbamate kinase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbamate kinase family [H]

Homologues:

Organism=Escherichia coli, GI1786732, Length=297, Percent_Identity=98.989898989899, Blast_Score=592, Evalue=1e-171,
Organism=Escherichia coli, GI1789238, Length=312, Percent_Identity=39.7435897435897, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1786516, Length=313, Percent_Identity=38.6581469648562, Blast_Score=149, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001048
- InterPro:   IPR003964 [H]

Pfam domain/function: PF00696 AA_kinase [H]

EC number: =2.7.2.2 [H]

Molecular weight: Translated: 31643; Mature: 31643

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLAL
CCEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHH
QNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQP
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHEEEEEEECCCCCCCCCC
EKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVI
HHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEE
CSGGGGVPVAEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCHHHHHHH
HATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
CCCHHHHCCHHHCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLAL
CCEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHH
QNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQP
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHEEEEEEECCCCCCCCCC
EKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVI
HHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEE
CSGGGGVPVAEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCHHHHHHH
HATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
CCCHHHHCCHHHCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]