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The map label for this gene is ybbM

Identifier: 218688357

GI number: 218688357

Start: 538626

End: 539405

Strand: Direct

Name: ybbM

Synonym: ECED1_0518

Alternate gene names: 218688357

Gene position: 538626-539405 (Clockwise)

Preceding gene: 218688356

Following gene: 218688361

Centisome position: 10.34

GC content: 46.15

Gene sequence:

>780_bases
ATGAACTCGCATAATATTACTAACGAATCATTGGCACTGGCATTAATGCTGGTGGTGGTGGCAATCTTAATTAGCCATAA
AGAAAAACTGGCGCTGGAGAAAGATATTCTCTGGAGCGTCGGGCGCGCGATAATTCAGCTGATTATTGTCGGCTATGTGC
TGAAGTATATTTTCAGCGTGGATGATGCCAGCCTGACATTATTGATGGTGTTATTTATCTGCTTTAATGCGGCGTGGAAC
GCGCAAAAACGCAGTAAATATATTGCTAAAGCTTTTATCTCATCGTTTATTGCCATTACGGTCGGGGCGGGAATTACTCT
GGCGGTGCTGATTTTATCGGGATCGATTGAGTTTATCCCGATGCAGGTGATCCCTATCGCCGGGATGATAGCCGGTAACG
CCATGGTAGCGGTGGGGTTGTGTTACAACAATTTAGGGCAACGGGTTATTAGCGAACAGCAACAGATTCAGGAGAAACTG
AGTCTTGGCGCGACGCCGAAACAGGCTTCAGCGATATTGATTCGCGACAGTATTCGCGCGGCTTTAATTCCGACGGTCGA
TTCAGCAAAAACGGTAGGCTTAGTGAGTTTACCAGGAATGATGTCCGGGCTGATATTTGCCGGGATTGATCCGGTGAAGG
CGATTAAATATCAGATTATGGTGACCTTTATGCTGCTCTCAACCGCCAGCCTGTCGACCATTATTGCCTGCTATTTAACC
TATCGTAAGTTTTACAATTCGCGCCACCAATTGGTGGTGACGCAATTGAAGAAGAAATGA

Upstream 100 bases:

>100_bases
ATTGCCGTGCTGTGGGTGACACACGATAAAGACGAAATTAATCATGCGGATAAAGTGATTACACTGCAACCGCATGCCGG
AGAAATGCAGGAAGCACGCT

Downstream 100 bases:

>100_bases
TGCGATGCCGGATGCGCAGCATCGCATCCGGCGTTGTGGTTCATGTGCCGATCAACAAAACATCAATACAACAACGCATA
CAGCTGGCGGCGATACTTCG

Product: putative permease of an ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWN
AQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT
YRKFYNSRHQLVVTQLKKK

Sequences:

>Translated_259_residues
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWN
AQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT
YRKFYNSRHQLVVTQLKKK
>Mature_259_residues
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWN
AQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT
YRKFYNSRHQLVVTQLKKK

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family

Homologues:

Organism=Escherichia coli, GI87081746, Length=259, Percent_Identity=100, Blast_Score=520, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBBM_ECOLI (P77307)

Other databases:

- EMBL:   U82664
- EMBL:   U00096
- EMBL:   AP009048
- RefSeq:   AP_001140.1
- RefSeq:   NP_415024.4
- ProteinModelPortal:   P77307
- STRING:   P77307
- EnsemblBacteria:   EBESCT00000005015
- EnsemblBacteria:   EBESCT00000017421
- GeneID:   945137
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5066
- KEGG:   eco:b0491
- EchoBASE:   EB3048
- EcoGene:   EG13260
- eggNOG:   COG0390
- GeneTree:   EBGT00050000010984
- HOGENOM:   HBG539152
- OMA:   VQLPGMM
- ProtClustDB:   CLSK879683
- BioCyc:   EcoCyc:G6267-MONOMER
- Genevestigator:   P77307
- InterPro:   IPR005226
- TIGRFAMs:   TIGR00245

Pfam domain/function: PF03649 UPF0014

EC number: NA

Molecular weight: Translated: 28165; Mature: 28165

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1e2db694)-; HASH(0x1f100884)-; HASH(0x1f1fe480)-; HASH(0x1f369f5c)-; HASH(0x1d91f334)-; HASH(0x1f3481b8)-; HASH(0x1f3635f8)-;

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIP
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEE
MQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEHHHHHH
ALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT
HHCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRKFYNSRHQLVVTQLKKK
HHHHHCCCHHHHHHHHHCH
>Mature Secondary Structure
MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIP
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEE
MQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEHHHHHH
ALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLT
HHCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRKFYNSRHQLVVTQLKKK
HHHHHCCCHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503