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The map label for this gene is rbsC [H]

Identifier: 218688200

GI number: 218688200

Start: 372902

End: 373873

Strand: Direct

Name: rbsC [H]

Synonym: ECED1_0357

Alternate gene names: 218688200

Gene position: 372902-373873 (Clockwise)

Preceding gene: 218688199

Following gene: 218688201

Centisome position: 7.16

GC content: 50.21

Gene sequence:

>972_bases
ATGGCTGAACTGAAAAAACGTCATGAATTCTGGCTGGCATTACTGATTATGGTGCTGTTTGTTGGCCTTGCCTGGCGCAG
CGACGAGTTTCTGACATTCGGTAATTTGTACGATCTCGCCAATAACTATGCCATGTTGACTATTCTCGCCTGTGGTTTGT
TTGTGGTGTTGATTTCCGGTGGAATTGATATTTCGTTTCCGGCAATGACCATCATTGCGCAATACGGCATGGTGCTGTTG
CTACAAAAAATTGGTGGTAACTTTGCTGTCGCGTTTGCACTGGCGGGCGGCATCGGCATTTTACTTGGCTTAATTAACGC
CTTACTGGTTAATCGCCTACGGGTGCCTTCTATCATCATCACCATTTCGACGCTGAATATTTTTTATGGCCTGCTGTTAT
GGTTGAGTAAAGGTGTGTGGCTGTACGACTTTCCGCCGTGGTTTGAGCAGGGGGTAATGTTGTTCAAGTACACCGATGCT
GACGGCTATGACTATGGCCTTGGTCTGCCGCTGATCGCCATGATTACGGTGGTGCTGCTGACAGCGTTTATCATGAATTT
CACCAGTGTAGGGCGCAAAATTTATGCCCTTGGCGGGAACCGTGAATCCGCCAGTCGCATCGGCTTTAGCGTGCTGAAAC
TGCAACTTTTCGTCTACGGCTATATGGGATTGATGTCTGGTGCTGCGGGTGTAGTGCAGTCGTGGACGGTGATGACTGTC
GCCCCCGATTCTCTTCTGGGTTATGAGCTGACAGTACTGGCTGCGGTGGTGCTTGGTGGCACTAGTTTGCTCGGCGGGCG
CGGCACGTTAACCGGTACTTTGCTCGGCGTGGTGTTGTTGGCAGTGATGCAAAACGGGCTAAATTTATTGGGAGTCTCGT
CTTACTGGCAAACATTGATCACCGGCATCATCATCGTTGCCAGCATTAGTGCCACGGCGTGGAGTCAGCATCAGAATCGG
AGTCTGCTATGA

Upstream 100 bases:

>100_bases
TGGTATCAAAGCCACCGGATTTTGGTAATGCAAAAAGGTCAGATCACCCATAGCTTCCTGCCTGACAGCAGTTCTCAGGC
CAGGATTGCGGAGGTGGTAA

Downstream 100 bases:

>100_bases
AAAAATCGTGGCGTAATAACGTTGAGTTTTACTTGATCGGCCTGCTGGTGCTAACTGTTGCCGCGTTCAGCATTACTATG
CCGGAGATTTTCTGGTCGAT

Product: sugar ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MAELKKRHEFWLALLIMVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLL
LQKIGGNFAVAFALAGGIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDA
DGYDYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTV
APDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASISATAWSQHQNR
SLL

Sequences:

>Translated_323_residues
MAELKKRHEFWLALLIMVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLL
LQKIGGNFAVAFALAGGIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDA
DGYDYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTV
APDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASISATAWSQHQNR
SLL
>Mature_322_residues
AELKKRHEFWLALLIMVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISGGIDISFPAMTIIAQYGMVLLL
QKIGGNFAVAFALAGGIGILLGLINALLVNRLRVPSIIITISTLNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDAD
GYDYGLGLPLIAMITVVLLTAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTVA
PDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLITGIIIVASISATAWSQHQNRS
LL

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=33.1189710610932, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI145693152, Length=319, Percent_Identity=29.153605015674, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788896, Length=332, Percent_Identity=30.1204819277108, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790524, Length=312, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI87082395, Length=331, Percent_Identity=29.3051359516616, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789992, Length=127, Percent_Identity=36.2204724409449, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787793, Length=283, Percent_Identity=27.9151943462898, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787794, Length=319, Percent_Identity=27.8996865203762, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34914; Mature: 34783

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELKKRHEFWLALLIMVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISG
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGGIGILLGLINALLVNRLRVPSIII
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TISTLNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDADGYDYGLGLPLIAMITVVLL
EHHHHHHHHHHHHHHHCCCEEEECCCHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
TAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTV
HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEE
APDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLI
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
TGIIIVASISATAWSQHQNRSLL
HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AELKKRHEFWLALLIMVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISG
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGGIGILLGLINALLVNRLRVPSIII
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TISTLNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDADGYDYGLGLPLIAMITVVLL
EHHHHHHHHHHHHHHHCCCEEEECCCHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
TAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTV
HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEE
APDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLI
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHH
TGIIIVASISATAWSQHQNRSLL
HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]