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The map label for this gene is lsrB [H]

Identifier: 218688198

GI number: 218688198

Start: 370390

End: 371376

Strand: Direct

Name: lsrB [H]

Synonym: ECED1_0355

Alternate gene names: 218688198

Gene position: 370390-371376 (Clockwise)

Preceding gene: 218688197

Following gene: 218688199

Centisome position: 7.11

GC content: 47.72

Gene sequence:

>987_bases
ATGATGAATAAACGTTTTGTTATCAATATGGTGTCTTCGCTGTTATTAGGCGCTGCGCTAATTTCTGCGCCGCTCCAGGC
AGCGGAAAAAGTGGTGGTGAATATCTCTAAAGTCGATGGTATGCCGTGGTTTAATCGCATGGGCGAAGGTGTGGTTGAGG
CGGGTAAAGCCTTTGGTGTTAATGCGTCACAGGTGGGGCCTTCAAGTACTGATGCTCCGCAACAAGTTAAAATTATTGAG
GATTTAATCGCCCGTAAGGTTAATGCAATTACAATTGTGCCAAACGATGCCAACGTGCTGGAACCGGTATTCAAAAAAGC
GCGAGATGCTGGAATTGTGGTTCTGACCAACGAATCCCCCGGTCAGCCAAGTGCTAACTGGGATATCGAAATCATTGATA
ACGAAAAATTTGCCGCTGAATATGTTGAACATATGGCGAAACGCATGGGTGGCAAGGGCGGCTATGTGATTTACGTGGGT
AGTTTGACCGTGCCGCAGCATAACTTATGGGCTGACTTGCTGGTGAAATACCAGAAAGAGCATTACCCGGATATGCATGA
AGTTACCCGCCGCATGCCGGTTGCCGAGAGTGTGGATGACTCACGTCGTACCACACTGGACCTGATGAAAACCTATCCTG
ACTTGAAAGCGGTTGTCTCCTTTGGTTCAAACGGTCCGATTGGCGCGGGACGTGCAGTGAAAGAGAAACGGGCGAAAAAT
AAAGTCGCAGTCTATGGCATGATGAGCCCTTCACAGGCGGCATCACTGATTAAAAGTGGTGATATCACCGAAGGGATTAC
TTACGATCCGGCCTCTGCAGGTTACGCACTCGCAGCCGTCGCCAGCACGTTGCTGAAGGGTGAAGAGATCAAACCTGGAT
TAGAAATGGAGAATCTCGGTAAGGCCGACGTAGATATGGATAAGCGAATTATCCGTTTCCATAAGGTATTACTGGTCAAC
AAAGACAATATCGACTCACTTTATTAA

Upstream 100 bases:

>100_bases
TAGGGCTGTTTATTCTGCATAAAAATATTCGAAAATTCTTATTCTCTCCAGCGCGCTAATTTGGGCGAACACTTCCTGAC
TACCCTGCAATGAGGCTGAA

Downstream 100 bases:

>100_bases
TCCATTTCTTCGGGGCGAAAGCCCCGATTCTTATTGCCAGGGGATGCTATGGAAACCTTCCTTTCCCTTCGTCATATCAA
CAAAACGTTTCATGCCACGC

Product: ribose ABC transporter substrate-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MMNKRFVINMVSSLLLGAALISAPLQAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGVNASQVGPSSTDAPQQVKIIE
DLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSANWDIEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVG
SLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKN
KVAVYGMMSPSQAASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPGLEMENLGKADVDMDKRIIRFHKVLLVN
KDNIDSLY

Sequences:

>Translated_328_residues
MMNKRFVINMVSSLLLGAALISAPLQAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGVNASQVGPSSTDAPQQVKIIE
DLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSANWDIEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVG
SLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKN
KVAVYGMMSPSQAASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPGLEMENLGKADVDMDKRIIRFHKVLLVN
KDNIDSLY
>Mature_328_residues
MMNKRFVINMVSSLLLGAALISAPLQAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGVNASQVGPSSTDAPQQVKIIE
DLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSANWDIEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVG
SLTVPQHNLWADLLVKYQKEHYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKN
KVAVYGMMSPSQAASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPGLEMENLGKADVDMDKRIIRFHKVLLVN
KDNIDSLY

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=294, Percent_Identity=27.891156462585, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35645; Mature: 35645

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNKRFVINMVSSLLLGAALISAPLQAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHCHHCCC
NASQVGPSSTDAPQQVKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESP
CHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC
GQPSANWDIEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKE
CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCEECCCHHHHHHHHHHHHHH
HYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKN
HCCCHHHHHHHCCCHHCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHCCC
KVAVYGMMSPSQAASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPGLEMENLG
CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCC
KADVDMDKRIIRFHKVLLVNKDNIDSLY
CCCCCHHHHHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure
MMNKRFVINMVSSLLLGAALISAPLQAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHCHHCCC
NASQVGPSSTDAPQQVKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESP
CHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC
GQPSANWDIEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKE
CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCEECCCHHHHHHHHHHHHHH
HYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKN
HCCCHHHHHHHCCCHHCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHCCC
KVAVYGMMSPSQAASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPGLEMENLG
CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCC
KADVDMDKRIIRFHKVLLVNKDNIDSLY
CCCCCHHHHHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA