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The map label for this gene is ydiP [H]

Identifier: 218688152

GI number: 218688152

Start: 319579

End: 320448

Strand: Direct

Name: ydiP [H]

Synonym: ECED1_0301

Alternate gene names: 218688152

Gene position: 319579-320448 (Clockwise)

Preceding gene: 218688148

Following gene: 218688153

Centisome position: 6.13

GC content: 44.48

Gene sequence:

>870_bases
ATGCGCTTGTGCTTCTGTCCTTCAGAACGAGAGAATAAGCCCCAGTTGGCGTATGTGAGTCAGGTCAGTGAGAGCAATGG
TCCGTATGTCCGGTTCATGCATATGCACCCACAGACCGTTGAACTGATTCTTATCACCGAAGGAGACGGGGAGTATTTCA
TTGGCGATCGCATCTACCCGGTTCGTAAAGGCGACCTGGTCATTTATAACAGCCAGGTGGTGCATGATGAGTATCTGGAA
AGCGGGCGGCCAATTGGCACTATTTGTTGTGGGATTAACAATATTTCGTGTCCGGGTCTACGTGAGAATGCGCTAATACC
GGATGATATTGTGCCGGTTATTCCACTGTATCACCATTATGCGACGGTGGAAAAACTGATGAGCTCCGTGTTTACCGTTA
TTAATCAGCATGCGGTGGAAGGGCCAGCAATGGCGCAGCTATTGACCCAGGTAGTACTCAAATACATTGAGGGAAATGTC
TTATTGCGCACAGGTAACGATGCCATACAGCGCCATGAAAATTTACTTGATTCAATAAAATCCTATATTGATCGCAATTT
CTATGAGCCAATTCGGCTGGATACACTGGCGACGAAATTTAATGTCAGTCCTTATTATGTTTCCCATGAATTTAAACGCC
GCTATGGTTATTCACCGATGGATTACCTGATAAAACGTAGGCTGGGGGAGGCTCAATCGTTACTAACCACGGATAAAGGC
GGGCGCGAAAAGATCACCTCTATTGCCTATCGTGTTGGCTTTAGCAACCTTAGTCATTTTCAGAATTACTTCAAAAATAA
AGTGGGGAAAACACCCGGTCAATATCGCAAGGACTATCGTAAAGCTAATTATTTATTATTTGAATATTAA

Upstream 100 bases:

>100_bases
TTATGATCTATATAGCATTTTTGTTTCATTTTGTGTAGTATAAAAATTCAAATTTCAGGGGTGTTTCGGCACCACAGTTT
CGGATATTGGAGGGTAAATC

Downstream 100 bases:

>100_bases
TGCTTGCTAAAATTTAATCGTCATGAGAATGGTCGCAATACTGCGGCCATTTTTTATTGTTATTCCTAAACCACCTCCTA
GGGAGGTGGTGATTGATCCT

Product: putative AraC-type DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRLCFCPSERENKPQLAYVSQVSESNGPYVRFMHMHPQTVELILITEGDGEYFIGDRIYPVRKGDLVIYNSQVVHDEYLE
SGRPIGTICCGINNISCPGLRENALIPDDIVPVIPLYHHYATVEKLMSSVFTVINQHAVEGPAMAQLLTQVVLKYIEGNV
LLRTGNDAIQRHENLLDSIKSYIDRNFYEPIRLDTLATKFNVSPYYVSHEFKRRYGYSPMDYLIKRRLGEAQSLLTTDKG
GREKITSIAYRVGFSNLSHFQNYFKNKVGKTPGQYRKDYRKANYLLFEY

Sequences:

>Translated_289_residues
MRLCFCPSERENKPQLAYVSQVSESNGPYVRFMHMHPQTVELILITEGDGEYFIGDRIYPVRKGDLVIYNSQVVHDEYLE
SGRPIGTICCGINNISCPGLRENALIPDDIVPVIPLYHHYATVEKLMSSVFTVINQHAVEGPAMAQLLTQVVLKYIEGNV
LLRTGNDAIQRHENLLDSIKSYIDRNFYEPIRLDTLATKFNVSPYYVSHEFKRRYGYSPMDYLIKRRLGEAQSLLTTDKG
GREKITSIAYRVGFSNLSHFQNYFKNKVGKTPGQYRKDYRKANYLLFEY
>Mature_289_residues
MRLCFCPSERENKPQLAYVSQVSESNGPYVRFMHMHPQTVELILITEGDGEYFIGDRIYPVRKGDLVIYNSQVVHDEYLE
SGRPIGTICCGINNISCPGLRENALIPDDIVPVIPLYHHYATVEKLMSSVFTVINQHAVEGPAMAQLLTQVVLKYIEGNV
LLRTGNDAIQRHENLLDSIKSYIDRNFYEPIRLDTLATKFNVSPYYVSHEFKRRYGYSPMDYLIKRRLGEAQSLLTTDKG
GREKITSIAYRVGFSNLSHFQNYFKNKVGKTPGQYRKDYRKANYLLFEY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=250, Percent_Identity=27.2, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790391, Length=119, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33315; Mature: 33315

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLCFCPSERENKPQLAYVSQVSESNGPYVRFMHMHPQTVELILITEGDGEYFIGDRIYP
CEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCEEECCEEEE
VRKGDLVIYNSQVVHDEYLESGRPIGTICCGINNISCPGLRENALIPDDIVPVIPLYHHY
EECCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ATVEKLMSSVFTVINQHAVEGPAMAQLLTQVVLKYIEGNVLLRTGNDAIQRHENLLDSIK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
SYIDRNFYEPIRLDTLATKFNVSPYYVSHEFKRRYGYSPMDYLIKRRLGEAQSLLTTDKG
HHHHCCCCCCHHHHHHHHEECCCCEEEHHHHHHHCCCCHHHHHHHHHHCHHHHHHHCCCC
GREKITSIAYRVGFSNLSHFQNYFKNKVGKTPGQYRKDYRKANYLLFEY
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCEEEEEC
>Mature Secondary Structure
MRLCFCPSERENKPQLAYVSQVSESNGPYVRFMHMHPQTVELILITEGDGEYFIGDRIYP
CEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCEEECCEEEE
VRKGDLVIYNSQVVHDEYLESGRPIGTICCGINNISCPGLRENALIPDDIVPVIPLYHHY
EECCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ATVEKLMSSVFTVINQHAVEGPAMAQLLTQVVLKYIEGNVLLRTGNDAIQRHENLLDSIK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
SYIDRNFYEPIRLDTLATKFNVSPYYVSHEFKRRYGYSPMDYLIKRRLGEAQSLLTTDKG
HHHHCCCCCCHHHHHHHHEECCCCEEEHHHHHHHCCCCHHHHHHHHHHCHHHHHHHCCCC
GREKITSIAYRVGFSNLSHFQNYFKNKVGKTPGQYRKDYRKANYLLFEY
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]