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The map label for this gene is ycbV [H]

Identifier: 218550689

GI number: 218550689

Start: 3463920

End: 3464444

Strand: Reverse

Name: ycbV [H]

Synonym: EFER_3400

Alternate gene names: 218550689

Gene position: 3464444-3463920 (Counterclockwise)

Preceding gene: 218550690

Following gene: 218550688

Centisome position: 75.5

GC content: 37.9

Gene sequence:

>525_bases
ATGACACGCTACTGTAATTTAATTGCTCTGTTAATTTCTGTGATATCAATGCCATCCATTGCTGATGATATAACGCATGC
AGGTGTTGTACGTATAGAAGGAATAATAACAGCAAAGACGTGTATTGTTGCCGATGAATCTAAAAATTTCACAGTTAACA
TGCCTGATGTTCCCAGCTATATGGTGAGAGATTCAGGGAATGTTACTGAAAAAATTGGCTTCTCTGTAAAGTTAACCCGT
TGTGGCAGTGATGTCAGTAATGCCAATGTCACGTTTGATGGAACATCAGTGAGTGAAGACGCGGCCCTGTATAAACTGGA
AGATGGCTCAGTCGATGGGTTAGCACTGGCTATTTTTGATAACAACAGACAAAGTATTAGTAATGGTATAAAGAGTACAA
GTTTTGCCCTTACACCATTGGTAGATAATACATTGCATTTCTTTGCTGCTTATAAAGCTATAAAAAATGATGTACAACCA
GGAGATGCGAATGCATCAGTTTCCTTTATCGTCACTTATGATTAA

Upstream 100 bases:

>100_bases
TTAACCTTTAAACTCCGCTATAAGTCAACTCAGCAAAACGTACATGCGGGACAGGCGAACGCACTGCTGTACTTTGATAT
AGACTATCAGTGAGGTTGAT

Downstream 100 bases:

>100_bases
TGTGCTGATATGCATTTTAATATGTTGCACAAATGCGCAAGCAGGAGTTGTTGTTGGCGGTACTCGTTTTGTTTACCCAG
AAAAGCAGTCATCAATTTCG

Product: fimbrial-like adhesin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MTRYCNLIALLISVISMPSIADDITHAGVVRIEGIITAKTCIVADESKNFTVNMPDVPSYMVRDSGNVTEKIGFSVKLTR
CGSDVSNANVTFDGTSVSEDAALYKLEDGSVDGLALAIFDNNRQSISNGIKSTSFALTPLVDNTLHFFAAYKAIKNDVQP
GDANASVSFIVTYD

Sequences:

>Translated_174_residues
MTRYCNLIALLISVISMPSIADDITHAGVVRIEGIITAKTCIVADESKNFTVNMPDVPSYMVRDSGNVTEKIGFSVKLTR
CGSDVSNANVTFDGTSVSEDAALYKLEDGSVDGLALAIFDNNRQSISNGIKSTSFALTPLVDNTLHFFAAYKAIKNDVQP
GDANASVSFIVTYD
>Mature_173_residues
TRYCNLIALLISVISMPSIADDITHAGVVRIEGIITAKTCIVADESKNFTVNMPDVPSYMVRDSGNVTEKIGFSVKLTRC
GSDVSNANVTFDGTSVSEDAALYKLEDGSVDGLALAIFDNNRQSISNGIKSTSFALTPLVDNTLHFFAAYKAIKNDVQPG
DANASVSFIVTYD

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081805, Length=155, Percent_Identity=34.1935483870968, Blast_Score=80, Evalue=5e-17,
Organism=Escherichia coli, GI1790773, Length=174, Percent_Identity=32.183908045977, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1787781, Length=179, Percent_Identity=25.6983240223464, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18626; Mature: 18495

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYCNLIALLISVISMPSIADDITHAGVVRIEGIITAKTCIVADESKNFTVNMPDVPSY
CCHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEEEEEEEEEEEECCCCEEEECCCCCCE
MVRDSGNVTEKIGFSVKLTRCGSDVSNANVTFDGTSVSEDAALYKLEDGSVDGLALAIFD
EEECCCCCHHHCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEEEE
NNRQSISNGIKSTSFALTPLVDNTLHFFAAYKAIKNDVQPGDANASVSFIVTYD
CCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
TRYCNLIALLISVISMPSIADDITHAGVVRIEGIITAKTCIVADESKNFTVNMPDVPSY
CHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEEEEEEEEEEEECCCCEEEECCCCCCE
MVRDSGNVTEKIGFSVKLTRCGSDVSNANVTFDGTSVSEDAALYKLEDGSVDGLALAIFD
EEECCCCCHHHCCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEEEE
NNRQSISNGIKSTSFALTPLVDNTLHFFAAYKAIKNDVQPGDANASVSFIVTYD
CCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]