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The map label for this gene is yrdD [H]

Identifier: 218550559

GI number: 218550559

Start: 3347512

End: 3348054

Strand: Reverse

Name: yrdD [H]

Synonym: EFER_3267

Alternate gene names: 218550559

Gene position: 3348054-3347512 (Counterclockwise)

Preceding gene: 218550560

Following gene: 218550558

Centisome position: 72.96

GC content: 49.91

Gene sequence:

>543_bases
ATGGCGAAATCAGCACTGTTCACGGTGCGTAATAATGAGTCCTGCCCAAAGTGCGGGGCTGAACTGGTTATTCGATCCGG
GAAACACGGTCCGTTTCTTGGATGCTCACAGTATCCGGCGTGTGACTACGTCCGTCCTCTGAAATCTTCAGCGGATGGAC
ATATCGTCAAAGTTCTGGAGGGACAGATTTGCCCTGCATGCGGCGCAAATCTGGTCTTACGCCAGGGGCGCTTTGGTATG
TTTGTTGGTTGCAGTAAGTATCCTGAATGCGAACATACCGAACTTATCGATAAACCGGACGAAACAGCAATTACCTGTCC
TCAATGTCGGACGGGCCATCTGGTCCAGCGCCGCTCCCGTTATGGCAAAACATTTCATTCCTGTGATCGCTACCCGGAGT
GTCAATTTGCCATTAACTTCAAACCTATAGCCGGAGAATGCCCTGAGTGTCATTATCCGCTACTCATCGAAAAGAAAACC
GCGCAGGGTGTAAAACACTTTTGTGCCAGTAAACAATGTGGAAAGCCGGTTTCGGCGGAATAA

Upstream 100 bases:

>100_bases
CCGGGCTGCGAAAATGCGTACCAGCAAATGGAAGAATTACTCTTTGAAGTGAATGAAGGTATGCTGCATTAATCATTTCT
TTAATTCAGCATAAGTTGTT

Downstream 100 bases:

>100_bases
TAACGTGAATAATAACCTGCAAGGAGACGCTATCGCAGCTGCGATAGATGTCCTCAATGAAGAACGTGTCATCGCCTATC
CCACGGAAGCCGTTTTCGGT

Product: DNA topoisomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQICPACGANLVLRQGRFGM
FVGCSKYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
AQGVKHFCASKQCGKPVSAE

Sequences:

>Translated_180_residues
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQICPACGANLVLRQGRFGM
FVGCSKYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
AQGVKHFCASKQCGKPVSAE
>Mature_179_residues
AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQICPACGANLVLRQGRFGMF
VGCSKYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA
QGVKHFCASKQCGKPVSAE

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=180, Percent_Identity=97.7777777777778, Blast_Score=366, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 19859; Mature: 19728

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
8.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
9.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE
CCCCEEEEEECCCCCCHHCHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEC
GQICPACGANLVLRQGRFGMFVGCSKYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR
CCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHCCCCCCCEEECCCCCCCHHHHHHHH
YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
HCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE
CCCEEEEEECCCCCCHHCHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEC
GQICPACGANLVLRQGRFGMFVGCSKYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR
CCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCHHCCCCCCCEEECCCCCCCHHHHHHHH
YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE
HCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]