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The map label for this gene is ygdR

Identifier: 218550081

GI number: 218550081

Start: 2831409

End: 2831627

Strand: Direct

Name: ygdR

Synonym: EFER_2766

Alternate gene names: 218550081

Gene position: 2831409-2831627 (Clockwise)

Preceding gene: 218550080

Following gene: 218550082

Centisome position: 61.7

GC content: 45.66

Gene sequence:

>219_bases
ATGAAAAAATGGGCAGTTATAATTTCTGCAGTCGGGCTGGCGTTTGCTGTTTCCGGTTGTAGCAGCGATTACGTGATGGC
AACGAAAGATGGCCGTATGATCCTGACTGATGGCAAACCGGAAATTGATGATGATACCGGGCTTGTGAGCTATCACGATC
AACAAGGCAATGCCATGCAGATTAATCGTGATGACGTTTCGCAAATCATTGAGCGTTAA

Upstream 100 bases:

>100_bases
TCCCCTCTCCTCACAGTTTAAGACTTTCCTGCTTTCAAGATATATAACGTCGGTTTATAAACAGACTATTATCATTTATG
GGCTAAATGAGGATAACCGG

Downstream 100 bases:

>100_bases
GCAATAAGGTCAGCCTCCTGCTGGCCTTAAGATATTTCACTTTCCCTTTTCCTTTCCCTCTGCCATTTTTATAGTCCTCA
TGTCGTGATTATAAAAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 72

Protein sequence:

>72_residues
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER

Sequences:

>Translated_72_residues
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER
>Mature_72_residues
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdI

Homologues:

Organism=Escherichia coli, GI1789198, Length=72, Percent_Identity=100, Blast_Score=149, Evalue=5e-38,
Organism=Escherichia coli, GI87082162, Length=72, Percent_Identity=59.7222222222222, Blast_Score=91, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGDR_ECO57 (P65296)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   B91090
- PIR:   E85935
- RefSeq:   NP_289386.1
- RefSeq:   NP_311717.1
- ProteinModelPortal:   P65296
- SMR:   P65296
- EnsemblBacteria:   EBESCT00000024678
- EnsemblBacteria:   EBESCT00000056484
- GeneID:   916497
- GeneID:   958295
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4151
- KEGG:   ecs:ECs3690
- GeneTree:   EBGT00050000010076
- HOGENOM:   HBG671268
- OMA:   SSQYIMS
- BioCyc:   ECOL83334:ECS3690-MONOMER
- InterPro:   IPR010305

Pfam domain/function: PF06004 DUF903

EC number: NA

Molecular weight: Translated: 7877; Mature: 7877

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQ
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCEEE
INRDDVSQIIER
ECHHHHHHHHCC
>Mature Secondary Structure
MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQ
CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCEEE
INRDDVSQIIER
ECHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796