Click here to switch to the map view.

The map label for this gene is cyoD

Identifier: 218549903

GI number: 218549903

Start: 2657652

End: 2657981

Strand: Direct

Name: cyoD

Synonym: EFER_2588

Alternate gene names: 218549903

Gene position: 2657652-2657981 (Clockwise)

Preceding gene: 218549902

Following gene: 218549904

Centisome position: 57.92

GC content: 50.3

Gene sequence:

>330_bases
ATGAGTCATTCTACCGATCACAGCGGCGCGTCCCATGGCAGCGTAAAAACCTACATGACAGGGTTTATCCTGTCGATCAT
TCTGACGGTGATTCCGTTCTGGATGGTGATGACAGGGGCTGCCTCTCCGGCCGTAATTCTGGGAACAATCCTGGCAATGG
CAGTGGTACAGGTTCTGGTGCATCTGGTGTGCTTCCTGCACATGAATACCAAATCAGATGAAGGCTGGAACATGACGGCG
TTTGTCTTCACCGTGCTAATCATCGCTATCCTGGTTGTCGGCTCCATCTGGATTATGTGGAACCTCAACTACAACATGAT
GATGCACTAA

Upstream 100 bases:

>100_bases
CTAACCGTACCCGCATCATGTGCCTGAGCCTGTTCTGGCACTTCCTGGATGTGGTTTGGATCTGTGTGTTCACTGTTGTT
TATCTGATGGGGGCGATGTA

Downstream 100 bases:

>100_bases
GAGCGGCGGTTATGATGTTTAAGCAATACCTGCAAGTAACGAAACCAGGCATCATCTTTGGCAACCTGATCTCGGTGATT
GGGGGATTCTTGCTGGCCTC

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTA
FVFTVLIIAILVVGSIWIMWNLNYNMMMH

Sequences:

>Translated_109_residues
MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTA
FVFTVLIIAILVVGSIWIMWNLNYNMMMH
>Mature_108_residues
SHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAF
VFTVLIIAILVVGSIWIMWNLNYNMMMH

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family

Homologues:

Organism=Escherichia coli, GI1786632, Length=109, Percent_Identity=100, Blast_Score=215, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYOD_ECO57 (P0ABJ7)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C90689
- PIR:   G85539
- RefSeq:   NP_286171.1
- RefSeq:   NP_308510.1
- ProteinModelPortal:   P0ABJ7
- EnsemblBacteria:   EBESCT00000027582
- EnsemblBacteria:   EBESCT00000059337
- GeneID:   914585
- GeneID:   957398
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0532
- KEGG:   ecs:ECs0483
- GeneTree:   EBGT00050000010012
- HOGENOM:   HBG534482
- OMA:   LNTNMMP
- ProtClustDB:   PRK10582
- BioCyc:   ECOL83334:ECS0483-MONOMER
- GO:   GO:0006810
- InterPro:   IPR005171
- InterPro:   IPR014210
- TIGRFAMs:   TIGR02847

Pfam domain/function: PF03626 COX4_pro

EC number: NA

Molecular weight: Translated: 12030; Mature: 11898

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2b038c78)-; HASH(0x2ac77d5c)-; HASH(0x2ad4acb0)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
10.1 %Met     (Translated Protein)
11.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
9.3 %Met     (Mature Protein)
10.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEECH
>Mature Secondary Structure 
SHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCEEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796