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The map label for this gene is rbsC [H]

Identifier: 218549838

GI number: 218549838

Start: 2588032

End: 2589099

Strand: Direct

Name: rbsC [H]

Synonym: EFER_2521

Alternate gene names: 218549838

Gene position: 2588032-2589099 (Clockwise)

Preceding gene: 218549837

Following gene: 218549839

Centisome position: 56.4

GC content: 51.87

Gene sequence:

>1068_bases
ATGAATCAGAAATATATGATCTATATGTACCTGTTGAAGGCCAGAACGTTTATCGCTCTGCTGTTAGTGATCGCCTTCTT
TAGTGTGATGGTGCCTAACTTCCTGACGGCCTCTAACCTGCTGATTATGACTCAACACGTTGCGATTACCGGGCTGCTGG
CAATCGGAATGACGCTGGTGATCCTGACCGGCGGCATCGATCTTTCCGTCGGCGCGGTAGCGGGGATCTGCGGAATGGTT
GCCGGGGCTCTGTTGACAAACGGCCTGCCATTGTGGAGCGGCAATATTATTTTCTTCAACGTGCCGGAAGTGATCCTCTG
CGTGGCGGTATTTGGCATTTTAGTGGGACTGGTGAATGGCGCGGTAATCACCCGCTTTGGTGTCGCGCCCTTTATATGCA
CCCTCGGTATGATGTACGTCGCCCGTGGCTCTGCCCTGCTGTTTAATGACGGCAGCACTTACCCTAATCTCAACGGCATA
GAAACGCTGGGCAACACGGGTTTCGCCACCCTTGGTTCTGGCACGTTTTTAGGCGTTTATCTGCCAATCTGGCTGATGAT
TGGCTTTTTGGTTTTAGGCTACTGGATCACGACTAAAACGCCGCTCGGTCGTTATATCTATGCCATTGGTGGCAATGAAT
CTGCCGCGCGACTGGCAGGCGTCCCCATCGTAAAAGTCAAAGTGTTCGTCTATGCGTTCTCTGGGTTATGCGCCGCATTT
GTCGGTTTGATTGTTGCCTCGCAGCTGCAAACTGCTCACCCAATGACCGGCAATATGTTCGAAATGGATGCTATTGGTGC
CACGGTTCTTGGTGGAACTGCGCTGGCGGGTGGTCGGGGACGTGTCTCTGGCTCGATTATCGGTGCCTTTGTCATTGTCT
TCCTCGCCGATGGCATGGTGATGATGGGTGTCAGTGATTTCTGGCAAATGGTCATTAAAGGCCTCGTTATCGTCACCGCC
GTGGTGGTCGATCAGTTCCAGCAAAAATTGCAAAACAAAGTCATTTTGATGCGTCGCCATGAAGAAAAGATGGCCGCCTC
ACCTGCCGTAAAACCGCTTTCCAGTTAA

Upstream 100 bases:

>100_bases
CTGATGGCCGTATTACCGCTGATCTCCCCCGGGGCGAAGTCACCCGAGAGAAACTGATCGCGGCTTCAACACCTCAAGAT
TAATCAGGCTGGAATTTCTT

Downstream 100 bases:

>100_bases
TTAACATCATTCAACCGGGCATTAAATTGCCCGGCTTATACAGGGGAAAACATATGCAACGTAATTTTCAGGGTAAGACT
GTAGTTATTACCGGGGCATG

Product: transport system permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MNQKYMIYMYLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMV
AGALLTNGLPLWSGNIIFFNVPEVILCVAVFGILVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNGI
ETLGNTGFATLGSGTFLGVYLPIWLMIGFLVLGYWITTKTPLGRYIYAIGGNESAARLAGVPIVKVKVFVYAFSGLCAAF
VGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVSGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGLVIVTA
VVVDQFQQKLQNKVILMRRHEEKMAASPAVKPLSS

Sequences:

>Translated_355_residues
MNQKYMIYMYLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMV
AGALLTNGLPLWSGNIIFFNVPEVILCVAVFGILVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNGI
ETLGNTGFATLGSGTFLGVYLPIWLMIGFLVLGYWITTKTPLGRYIYAIGGNESAARLAGVPIVKVKVFVYAFSGLCAAF
VGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVSGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGLVIVTA
VVVDQFQQKLQNKVILMRRHEEKMAASPAVKPLSS
>Mature_355_residues
MNQKYMIYMYLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLVILTGGIDLSVGAVAGICGMV
AGALLTNGLPLWSGNIIFFNVPEVILCVAVFGILVGLVNGAVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNGI
ETLGNTGFATLGSGTFLGVYLPIWLMIGFLVLGYWITTKTPLGRYIYAIGGNESAARLAGVPIVKVKVFVYAFSGLCAAF
VGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVSGSIIGAFVIVFLADGMVMMGVSDFWQMVIKGLVIVTA
VVVDQFQQKLQNKVILMRRHEEKMAASPAVKPLSS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=334, Percent_Identity=39.5209580838323, Blast_Score=225, Evalue=4e-60,
Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=34.8534201954397, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1789992, Length=359, Percent_Identity=32.8690807799443, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788896, Length=326, Percent_Identity=33.4355828220859, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1790524, Length=329, Percent_Identity=28.8753799392097, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI145693214, Length=260, Percent_Identity=38.4615384615385, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788471, Length=339, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787794, Length=334, Percent_Identity=32.0359281437126, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787793, Length=326, Percent_Identity=30.6748466257669, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082395, Length=259, Percent_Identity=32.046332046332, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37559; Mature: 37559

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKYMIYMYLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLV
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHH
ILTGGIDLSVGAVAGICGMVAGALLTNGLPLWSGNIIFFNVPEVILCVAVFGILVGLVNG
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEHHHHHHHHHHHHHHHHHHCC
AVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNGIETLGNTGFATLGSGTFLGVY
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCEECCCCCHHHHH
LPIWLMIGFLVLGYWITTKTPLGRYIYAIGGNESAARLAGVPIVKVKVFVYAFSGLCAAF
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
VGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVSGSIIGAFVIVFLADGMV
HHHHHHHHHHHCCCCCCCEEEHHHCCHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCHH
MMGVSDFWQMVIKGLVIVTAVVVDQFQQKLQNKVILMRRHEEKMAASPAVKPLSS
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNQKYMIYMYLLKARTFIALLLVIAFFSVMVPNFLTASNLLIMTQHVAITGLLAIGMTLV
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHH
ILTGGIDLSVGAVAGICGMVAGALLTNGLPLWSGNIIFFNVPEVILCVAVFGILVGLVNG
HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEHHHHHHHHHHHHHHHHHHCC
AVITRFGVAPFICTLGMMYVARGSALLFNDGSTYPNLNGIETLGNTGFATLGSGTFLGVY
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCEECCCCCHHHHH
LPIWLMIGFLVLGYWITTKTPLGRYIYAIGGNESAARLAGVPIVKVKVFVYAFSGLCAAF
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHH
VGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTALAGGRGRVSGSIIGAFVIVFLADGMV
HHHHHHHHHHHCCCCCCCEEEHHHCCHHHCCCCEECCCCCCCCHHHHHHHHHHHHHCCHH
MMGVSDFWQMVIKGLVIVTAVVVDQFQQKLQNKVILMRRHEEKMAASPAVKPLSS
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]