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The map label for this gene is shf [H]

Identifier: 218549258

GI number: 218549258

Start: 1972226

End: 1973044

Strand: Reverse

Name: shf [H]

Synonym: EFER_1918

Alternate gene names: 218549258

Gene position: 1973044-1972226 (Counterclockwise)

Preceding gene: 218549259

Following gene: 218549257

Centisome position: 43.0

GC content: 38.95

Gene sequence:

>819_bases
ATGCTAAAGGCAAAAAATCTCCCTGTGCTGATGTACCATCATGTCAGTAACTGTCCAGGGCTTGTCACACTTTCGCCAAA
AACATTTCGGGAGCAGATGAAATGGTTGGCTGATCATAAATGGAAAACGGTGACTTCAGATGAAATTGAATATTTTTACG
AAGGTGGTGAACTTCCTCGTAAAAGTGTAATGTTGACTTTTGATGATGGCTATCTGGATAACTGGTTTCAGGTCTATCCG
GTATTAAAAGAGTTTAATCTCAAAGCTCATATATTTTTGATTGCCGGACTTATAGGTGATGGTCCGATACGGTCATTTCA
GAAAAGAGAGTATTCTCATCAGGATTGTGAGCAAATAATAAATAAAGATAATGCTGATGATGTGATGCTCCGTTGGTCAG
AAGTTGATGTAATGCTGAGTTCAGGATTGGTTGAATTCCACATTCATACCCATTCTCATATTCGCTGGGACAAAATGTAC
AGTTATCGGGAAGAACAATGCCAATATCTTAAGCAAGATATTCTGGAGAGCAGAAAAGTATTTCTGGATAAAATAGGGAA
GTGCAGTAAACATTTTTGCTGGCCAGAAGGGTATTACAATAGCGATTATATTAAAGTGGCTGAAGAGCTTGGGTTTTCGT
ATTTATACACAACAGAAAGAAGAATGAATAACCGTACAAATGGAACCTTGCGTTTGGGACGGATTAGCACTAAAGAGCGA
GAACACTCGGCATGGCTTAAAAGACGTCTTTTCTGTTATACGACACCACTGTTTTCTTCTTTGTTGGCCCTTTATAAAGG
CCCCAGAGTAACTGATTGA

Upstream 100 bases:

>100_bases
AAGAACATAAAAATTATCGGGCACTATTTTATAGCGCCCGATGATGTAATATTTGTAATCTATCAATTTAATAGAATTTT
TTCTGAAAAAAAAGAAATAT

Downstream 100 bases:

>100_bases
TGAATATAGTCGTCATGCTTCAATTTGCATGTGTTATAACATTTATGAGAATGCAACAGAACGAGAGAAGCATTGGATTC
AAATATTTCTCGAATGGAAG

Product: carbohydrate transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLKAKNLPVLMYHHVSNCPGLVTLSPKTFREQMKWLADHKWKTVTSDEIEYFYEGGELPRKSVMLTFDDGYLDNWFQVYP
VLKEFNLKAHIFLIAGLIGDGPIRSFQKREYSHQDCEQIINKDNADDVMLRWSEVDVMLSSGLVEFHIHTHSHIRWDKMY
SYREEQCQYLKQDILESRKVFLDKIGKCSKHFCWPEGYYNSDYIKVAEELGFSYLYTTERRMNNRTNGTLRLGRISTKER
EHSAWLKRRLFCYTTPLFSSLLALYKGPRVTD

Sequences:

>Translated_272_residues
MLKAKNLPVLMYHHVSNCPGLVTLSPKTFREQMKWLADHKWKTVTSDEIEYFYEGGELPRKSVMLTFDDGYLDNWFQVYP
VLKEFNLKAHIFLIAGLIGDGPIRSFQKREYSHQDCEQIINKDNADDVMLRWSEVDVMLSSGLVEFHIHTHSHIRWDKMY
SYREEQCQYLKQDILESRKVFLDKIGKCSKHFCWPEGYYNSDYIKVAEELGFSYLYTTERRMNNRTNGTLRLGRISTKER
EHSAWLKRRLFCYTTPLFSSLLALYKGPRVTD
>Mature_272_residues
MLKAKNLPVLMYHHVSNCPGLVTLSPKTFREQMKWLADHKWKTVTSDEIEYFYEGGELPRKSVMLTFDDGYLDNWFQVYP
VLKEFNLKAHIFLIAGLIGDGPIRSFQKREYSHQDCEQIINKDNADDVMLRWSEVDVMLSSGLVEFHIHTHSHIRWDKMY
SYREEQCQYLKQDILESRKVFLDKIGKCSKHFCWPEGYYNSDYIKVAEELGFSYLYTTERRMNNRTNGTLRLGRISTKER
EHSAWLKRRLFCYTTPLFSSLLALYKGPRVTD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1787260, Length=248, Percent_Identity=22.9838709677419, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786322, Length=225, Percent_Identity=27.1111111111111, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 32282; Mature: 32282

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAKNLPVLMYHHVSNCPGLVTLSPKTFREQMKWLADHKWKTVTSDEIEYFYEGGELPR
CCCCCCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHEECCCCCCC
KSVMLTFDDGYLDNWFQVYPVLKEFNLKAHIFLIAGLIGDGPIRSFQKREYSHQDCEQII
CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEHHCCCHHHHHHHHCCCHHHHHHHH
NKDNADDVMLRWSEVDVMLSSGLVEFHIHTHSHIRWDKMYSYREEQCQYLKQDILESRKV
CCCCCCCEEEEHHHHHHHHHCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
FLDKIGKCSKHFCWPEGYYNSDYIKVAEELGFSYLYTTERRMNNRTNGTLRLGRISTKER
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCEEEEECCCCHHH
EHSAWLKRRLFCYTTPLFSSLLALYKGPRVTD
HHHHHHHHHHHHEECHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLKAKNLPVLMYHHVSNCPGLVTLSPKTFREQMKWLADHKWKTVTSDEIEYFYEGGELPR
CCCCCCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHEECCCCCCC
KSVMLTFDDGYLDNWFQVYPVLKEFNLKAHIFLIAGLIGDGPIRSFQKREYSHQDCEQII
CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEEHHCCCHHHHHHHHCCCHHHHHHHH
NKDNADDVMLRWSEVDVMLSSGLVEFHIHTHSHIRWDKMYSYREEQCQYLKQDILESRKV
CCCCCCCEEEEHHHHHHHHHCCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
FLDKIGKCSKHFCWPEGYYNSDYIKVAEELGFSYLYTTERRMNNRTNGTLRLGRISTKER
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEHHHHHCCCCCCEEEEECCCCHHH
EHSAWLKRRLFCYTTPLFSSLLALYKGPRVTD
HHHHHHHHHHHHEECHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]