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The map label for this gene is flgD [H]

Identifier: 218549197

GI number: 218549197

Start: 1906205

End: 1906900

Strand: Reverse

Name: flgD [H]

Synonym: EFER_1854

Alternate gene names: 218549197

Gene position: 1906900-1906205 (Counterclockwise)

Preceding gene: 218549198

Following gene: 218549196

Centisome position: 41.56

GC content: 51.58

Gene sequence:

>696_bases
ATGTCTATCGCCGTAACGATGAATGACGCGAGCAATAACGGCGTCTCTAACACCAGCAACAACTCACTGACTGGCGGCAA
TGCCGCAGATTTACAGAGCAGTTTTCTTACTTTGCTGGTGGCACAACTTAAAAATCAGGATCCAACGAATCCCATGGAGA
ATAACGAGCTGACTTCTCAGCTCGCACAAATCAGTACCGTCAGTGGCATTGAAAAACTCAACACCACTCTGGGCGCTATC
TCCGGGCAGATTGATAACAGCCAGTCTTTACAAGCCAGTTCCCTGATTGGTCATGGGGTGATGATCCCTGGCACGACAAT
CCTTGCAGGGAAGGGAACAGATGAGGCTGCTGTAACCACAACCACGCCATTTGGGGTAGAGCTACAACAGTCCGCAGACA
AAGTCACAGCCACCATTACCGATAAAAATGGTGTCGTGATACGCACGATCGATATCGGTGAGTTAAAGGCGGGGGTTCAT
AGCTTCACCTGGGATGGCACGCTGACCGATGGCAGCACCGCGCCCAATGGTTCTTATAACGTAGCGATCAGCGCCAGCAA
CGGTGGTACGCAACTGGTTGCTCAGCCACTGCAGTTTGCTCTGGTTCAGGGGGTGATTCGCGGCAATAACGGTAACACGC
TGGATCTCGGCACTTACGGTACTACCACCCTCGACGAAGTACGGCAGATCATTTAA

Upstream 100 bases:

>100_bases
TGTCAGCTTCACGCAGCTACCAGGCCAACGTTGAAGTGCTGAATACCGTGAAAAGTATGATGCTGAAAACTTTGACGCTG
GGTCAATAAAGGAGCCCGTA

Downstream 100 bases:

>100_bases
GCCTTCACATTTCAGGAGTCAGTCATGGCCTTTTCACAAGCGGTTAGCGGTTTAAATGCTGCCGCCACAAATCTCGATGT
CATTGGCAACAATATCGCCA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSIAVTMNDASNNGVSNTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGAI
SGQIDNSQSLQASSLIGHGVMIPGTTILAGKGTDEAAVTTTTPFGVELQQSADKVTATITDKNGVVIRTIDIGELKAGVH
SFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII

Sequences:

>Translated_231_residues
MSIAVTMNDASNNGVSNTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGAI
SGQIDNSQSLQASSLIGHGVMIPGTTILAGKGTDEAAVTTTTPFGVELQQSADKVTATITDKNGVVIRTIDIGELKAGVH
SFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII
>Mature_230_residues
SIAVTMNDASNNGVSNTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGAIS
GQIDNSQSLQASSLIGHGVMIPGTTILAGKGTDEAAVTTTTPFGVELQQSADKVTATITDKNGVVIRTIDIGELKAGVHS
FTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=231, Percent_Identity=90.9090909090909, Blast_Score=390, Evalue=1e-110,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23753; Mature: 23621

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAVTMNDASNNGVSNTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISTVSGIEKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTILAGKGTDEAAVTT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEECCCCEEEEECCCCCCEEEE
TTPFGVELQQSADKVTATITDKNGVVIRTIDIGELKAGVHSFTWDGTLTDGSTAPNGSYN
CCCCCEEECCCCCEEEEEEECCCCEEEEEEEHHHHHCCCEEEECCCEECCCCCCCCCCEE
VAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII
EEEEECCCCHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCHHHHHHHC
>Mature Secondary Structure 
SIAVTMNDASNNGVSNTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISTVSGIEKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTILAGKGTDEAAVTT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEECCCCEEEEECCCCCCEEEE
TTPFGVELQQSADKVTATITDKNGVVIRTIDIGELKAGVHSFTWDGTLTDGSTAPNGSYN
CCCCCEEECCCCCEEEEEEECCCCEEEEEEEHHHHHCCCEEEECCCEECCCCCCCCCCEE
VAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII
EEEEECCCCHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]