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The map label for this gene is yceD [H]

Identifier: 218549185

GI number: 218549185

Start: 1891518

End: 1892039

Strand: Reverse

Name: yceD [H]

Synonym: EFER_1840

Alternate gene names: 218549185

Gene position: 1892039-1891518 (Counterclockwise)

Preceding gene: 218549187

Following gene: 218549184

Centisome position: 41.23

GC content: 48.08

Gene sequence:

>522_bases
ATGCAAAAGGTAAAATTACCCCTGACTCTTGATCCGGTTCGCACGGCTCAAAAACGACTTGATTACCAGGGTATTTATAC
TCCGGATCAGGTTGAGCGTGTCGCCGAATCTGTGGTCAGTGTGGACAGTGATGTGGAATGCTCCATGTCGTTCGCTATCG
ATAACCAACGTCTCGCCGTAATTACTGGTGATGCGAAGGTAACGGTAACGCTCGAATGTCAGCGTTGCGGGAAGCCGTTT
ACCCATCATGTCTACACAACGTATTGTTTTAGTCCTGTGCGTTCAGACGAACAGGCTGAAGCACTGCCGGAAGCGTATGA
ACCGATTGAGGTTAACGAATTCGGTGAAATCGATCTGCTTGCAATGGTAGAAGATGAAATCATCCTCGCCTTGCCAGTAG
TTCCGGTGCATGATTCTGAACACTGTGAAGTGTCCGAAGCGGACATGGTCTTTGGTGAACTGCCTGAAGAAGCGCAAAAA
CCAAACCCATTTGCCGTATTAGCCAGCTTAAAGCGTAAGTAA

Upstream 100 bases:

>100_bases
AGGCTGTAACCCGCAATGTGTGCGAATTATTGGCAAAAGGCAACCGCAGGCTGCCTTTTTCTTTGACTATACGACGTTAC
GAAGTTAATATGCGCGCCCT

Downstream 100 bases:

>100_bases
TTGGTGCTCCCCGTTGGATCGGGGATAAACCGTAATTGAGGAGTAAGGTCCATGGCCGTACAACAGAATAAACCAACCCG
TTCCAAACGTGGCATGCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVITGDAKVTVTLECQRCGKPF
THHVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQK
PNPFAVLASLKRK

Sequences:

>Translated_173_residues
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVITGDAKVTVTLECQRCGKPF
THHVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQK
PNPFAVLASLKRK
>Mature_173_residues
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAVITGDAKVTVTLECQRCGKPF
THHVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQK
PNPFAVLASLKRK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=173, Percent_Identity=98.2658959537572, Blast_Score=348, Evalue=7e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19311; Mature: 19311

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV
CCEEECCEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEE
ITGDAKVTVTLECQRCGKPFTHHVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL
EECCCEEEEEEEHHHCCCCCHHHEEEEEEECCCCCCHHHHHCHHHCCCCCCCCCCCEEEE
AMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK
EEECCCEEEEECCEECCCCCCCCCCCHHHHHCCCCHHHCCCCCCEEEHHHHCC
>Mature Secondary Structure
MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSDVECSMSFAIDNQRLAV
CCEEECCEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEE
ITGDAKVTVTLECQRCGKPFTHHVYTTYCFSPVRSDEQAEALPEAYEPIEVNEFGEIDLL
EECCCEEEEEEEHHHCCCCCHHHEEEEEEECCCCCCHHHHHCHHHCCCCCCCCCCCEEEE
AMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLKRK
EEECCCEEEEECCEECCCCCCCCCCCHHHHHCCCCHHHCCCCCCEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]