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The map label for this gene is ycfM [H]

Identifier: 218549169

GI number: 218549169

Start: 1877728

End: 1878369

Strand: Reverse

Name: ycfM [H]

Synonym: EFER_1823

Alternate gene names: 218549169

Gene position: 1878369-1877728 (Counterclockwise)

Preceding gene: 218549170

Following gene: 218549168

Centisome position: 40.93

GC content: 52.34

Gene sequence:

>642_bases
ATGATAAAAATCAATCGCTACGCCATAGTTGCCGCGCTGGCGATGTTCCTCGCCGGTTGTACATTGCAACGAGAACCTGC
ACCAGTCGAAGAAGTAAAACCTACACCGGAGCAGCCAGTGCAACCACAACCACCTGTAACCACCGTGCCATCTGTGCCGA
CGATCCCGCAACAACCAGGGCCGGTAGAGCATGAAGACCAAACAGCTCCGCCAGCACCGCATGTCAGACATTACGACTGG
AATGGGGCGATGCAACCAATGGTTGGTAAAATGCTGCAGGCTGATGGCGTAAGTGCCGGTAGCGTCCTGTTGGTGGACAG
CGTCAACAACCGGACTAACGGTACGCTGAATGCGGGTGAAGCTACAGAGACCTTACGCAATGCTCTGGCGAATAACGGTA
AATTCACCTTAGTGTCTGCCCAGCAACTTTCGATGGCAAAACAGCAGCTTGGTTTATCACCTCAGGACAGCCTTGGAACC
CGGAGCAAGGCGATAGGTATTGCACGCAATGTAGGTGCTCATTATGTGCTTTACTCTAGTGCGTCTGGCAATGTCAACGC
ACCAACCTTACAAATGCAACTGATGCTGGTACAGACCGGCGAGATCATCTGGTCAGGTAAAGGTGCAGTACAGCAGCAAT
AA

Upstream 100 bases:

>100_bases
ACTATACCGGCACGTTCGTCGGTAACGTTGTACGGCAGCGCCAGATATCTTGGGGCGCACAAAGTCAGACTTTATCTTTA
TTTATAAGGGGTGAAACTTG

Downstream 100 bases:

>100_bases
TTCGCTAACGCGCGACGAGATACTGTCGCGCTATTTCCCGCAATATTATCTTGTGGAGTCCTGCCAGTGTGGGCTTAGCG
GCAGTAGTGTTGTTATTGAA

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MIKINRYAIVAALAMFLAGCTLQREPAPVEEVKPTPEQPVQPQPPVTTVPSVPTIPQQPGPVEHEDQTAPPAPHVRHYDW
NGAMQPMVGKMLQADGVSAGSVLLVDSVNNRTNGTLNAGEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVQQQ

Sequences:

>Translated_213_residues
MIKINRYAIVAALAMFLAGCTLQREPAPVEEVKPTPEQPVQPQPPVTTVPSVPTIPQQPGPVEHEDQTAPPAPHVRHYDW
NGAMQPMVGKMLQADGVSAGSVLLVDSVNNRTNGTLNAGEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVQQQ
>Mature_213_residues
MIKINRYAIVAALAMFLAGCTLQREPAPVEEVKPTPEQPVQPQPPVTTVPSVPTIPQQPGPVEHEDQTAPPAPHVRHYDW
NGAMQPMVGKMLQADGVSAGSVLLVDSVNNRTNGTLNAGEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVQQQ

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=213, Percent_Identity=90.1408450704225, Blast_Score=397, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014094 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22621; Mature: 22621

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKINRYAIVAALAMFLAGCTLQREPAPVEEVKPTPEQPVQPQPPVTTVPSVPTIPQQPG
CEEECHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PVEHEDQTAPPAPHVRHYDWNGAMQPMVGKMLQADGVSAGSVLLVDSVNNRTNGTLNAGE
CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCH
ATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSS
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCEEEEEEC
ASGNVNAPTLQMQLMLVQTGEIIWSGKGAVQQQ
CCCCCCCCEEEEEEEEEECCCEEECCCCCCCCC
>Mature Secondary Structure
MIKINRYAIVAALAMFLAGCTLQREPAPVEEVKPTPEQPVQPQPPVTTVPSVPTIPQQPG
CEEECHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PVEHEDQTAPPAPHVRHYDWNGAMQPMVGKMLQADGVSAGSVLLVDSVNNRTNGTLNAGE
CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCH
ATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSS
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCEEEEEEC
ASGNVNAPTLQMQLMLVQTGEIIWSGKGAVQQQ
CCCCCCCCEEEEEEEEEECCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]