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The map label for this gene is ychF [H]

Identifier: 218549106

GI number: 218549106

Start: 1807189

End: 1808280

Strand: Direct

Name: ychF [H]

Synonym: EFER_1758

Alternate gene names: 218549106

Gene position: 1807189-1808280 (Clockwise)

Preceding gene: 218549105

Following gene: 218549107

Centisome position: 39.38

GC content: 50.55

Gene sequence:

>1092_bases
ATGGGATTCAAATGCGGTATCGTCGGTTTGCCCAACGTCGGGAAATCCACCCTGTTCAACGCGCTGACCAAAGCCGGTAT
TGAAGCGGCCAACTTTCCATTCTGCACCATTGAGCCGAACACAGGCGTCGTGCCAATGCCCGATCCACGTCTGGACCAAC
TGGCTGAGATCGTAGAACCGCAGCGTACGCTTCCCACCACCATGGAGTTTGTTGATATTGCGGGTCTGGTGAAAGGCGCG
TCGAAAGGTGAAGGTCTGGGTAACCAGTTCCTGACAAACATCCGTGAAACTGAAGCGATTGGCCACGTTGTGCGTTGCTT
TGAAAATGACAACATCATCCACGTCTCCGGCAAAGTTAACCCGGCAGATGATATTGAGGTTATCAATACCGAACTGGCGC
TGGCAGACCTTGACACCTGTGAGCGTGCAATTCATCGTGTGCAGAAGAAAGCCAAAGGTGGCGATAAAGACGCTAAAGCA
GAACTGGCAGTGCTGGAAAAATGCCTGCCACAACTGGAAAACGCTGGCATGCTGCGCGCACTGGATCTGAGTGCGGAAGA
AAAAGCCGCTATCCGCTATCTGAGCTTCCTGACGCTGAAACCAACAATGTACATTGCTAACGTCAATGAAGATGGTTTCG
AAAACAACCCGTATCTCGATCAGGTTCGTGAAATTGCGGCTAAAGAAGGTTCTGTGGTTGTTCCGGTTTGTGCTGCTGTA
GAAGCCGATATCGCAGAGCTTGACGACGAAGAGCGTGAAGAGTTTATGCAGGAACTGGGTCTGGAAGAACCGGGGCTAAA
CCGCGTGATCCGTGCCGGATACAAGCTGCTGAATCTGCAAACTTACTTTACCGCAGGTGTTAAGGAAGTGCGTGCATGGA
CCATTCCGGTGGGCGCGACGGCTCCGCAAGCAGCCGGTAAAATCCATACCGATTTTGAGAAAGGTTTTATCCGCGCACAG
ACGATCTCTTTTGAAGATTTCATCACCTATAAAGGTGAGCAGGGCGCGAAAGAAGCCGGGAAAATGCGTGCAGAAGGTAA
AGATTACATCGTTAAAGATGGCGATGTAATGAACTTCCTGTTTAACGTTTAA

Upstream 100 bases:

>100_bases
TTTTTGTCGTCTGCCGTGTATAATAGGCAGAGTTATTTCCATTTCTACAATCTGTTTTACATAACAGATTGATTATTAAG
ATATTAAGGTGATTTAAATC

Downstream 100 bases:

>100_bases
ACGTTCTCGCCTTTCAATCTACTGAAAAATCCACGCCAGGCGTGGATTTTTTTATATCTCATACTTGCCGAATTTCTTTT
GGTTAATCACCCTGTCTCGC

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVEPQRTLPTTMEFVDIAGLVKGA
SKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
EADIAELDDEEREEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQ
TISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV

Sequences:

>Translated_363_residues
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVEPQRTLPTTMEFVDIAGLVKGA
SKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
EADIAELDDEEREEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQ
TISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV
>Mature_362_residues
GFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVEPQRTLPTTMEFVDIAGLVKGAS
KGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAE
LAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAVE
ADIAELDDEEREEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQT
ISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=44.4444444444444, Blast_Score=308, Evalue=5e-84,
Organism=Homo sapiens, GI58761502, Length=227, Percent_Identity=39.647577092511, Blast_Score=159, Evalue=6e-39,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=99.4490358126722, Blast_Score=739, Evalue=0.0,
Organism=Escherichia coli, GI1789574, Length=127, Percent_Identity=31.496062992126, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=365, Percent_Identity=41.0958904109589, Blast_Score=289, Evalue=2e-78,
Organism=Saccharomyces cerevisiae, GI6319499, Length=368, Percent_Identity=39.6739130434783, Blast_Score=262, Evalue=8e-71,
Organism=Saccharomyces cerevisiae, GI6321773, Length=381, Percent_Identity=34.3832020997375, Blast_Score=195, Evalue=1e-50,
Organism=Saccharomyces cerevisiae, GI6321649, Length=145, Percent_Identity=37.2413793103448, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640873, Length=366, Percent_Identity=43.9890710382514, Blast_Score=304, Evalue=7e-83,
Organism=Drosophila melanogaster, GI24640877, Length=366, Percent_Identity=43.9890710382514, Blast_Score=304, Evalue=7e-83,
Organism=Drosophila melanogaster, GI24640875, Length=366, Percent_Identity=43.9890710382514, Blast_Score=304, Evalue=7e-83,
Organism=Drosophila melanogaster, GI24640879, Length=328, Percent_Identity=41.7682926829268, Blast_Score=249, Evalue=2e-66,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39683; Mature: 39552

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVEP
CCEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCC
QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
LDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
ECCCCHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHH
EADIAELDDEEREEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT
HHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHEEEEEECCCC
APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL
CCHHCCCCCCHHHHCEEEEEEECHHHHEEECCCCCHHHHHHHHCCCCCEEEECCHHHHHH
FNV
HCC
>Mature Secondary Structure 
GFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVEP
CEEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCC
QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
LDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV
ECCCCHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHH
EADIAELDDEEREEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT
HHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHEEEEEECCCC
APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL
CCHHCCCCCCHHHHCEEEEEEECHHHHEEECCCCCHHHHHHHHCCCCCEEEECCHHHHHH
FNV
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]