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The map label for this gene is ychA [H]

Identifier: 218549095

GI number: 218549095

Start: 1797045

End: 1797854

Strand: Reverse

Name: ychA [H]

Synonym: EFER_1747

Alternate gene names: 218549095

Gene position: 1797854-1797045 (Counterclockwise)

Preceding gene: 218549096

Following gene: 218549094

Centisome position: 39.18

GC content: 45.31

Gene sequence:

>810_bases
ATGAAATCGTTAGCTGATTTCGAATTTAATAAAGCGCCGCTGTGTGATGGGATGATCCTGGCGTCGGAGAATATCCGCAA
GGACTTTCCTTCTTGCTATGTCTACGATGAGCTTAATCGTCTGGTCAGTCTGGCGCAGGAAGAAATTGGTGAATTTCTGT
CGCAGGATGCGCAACTGGAAAAACTGTTGGCGCTTTTTTATGGCGAATGGGGATTCCGGCAAACGCAGGGCGTGTATCGT
CTGTCAGATGCTTTGTGGCTTGATAACGTCCTGAACAAACGTCAGGGTAGTGCAGTCTCTTTAGGTGCTATTTTGCTGTG
GATTGCTAACCGTTTGGGGTTGCCGCTGGTGCCGGTGATTTTCCCTACTCAGTTGATTCTGCGGATTGAATCGCAGGATG
GCGAAATGTGGTTAATCAACCCTTTTAACGGCGAAACACTGGATGAGCACATGCTTGAGGTGTGGCTGAAGGGGAATATC
AGCCCGGATTCAGAACTGTTTTTTGAGGATCTGGATGAAGCCGATAACAGCGAAGTCATTCGCAAATTGCTCGATACGCT
GAAATCTTCATTAATTGAAGAAGATCAGATGGAGCTGGCACTGCGCACCAGTGAAGCGTTATTACAGTTTAATCCGCAAG
ATCCGTATGAAATTCGTGACCGAGGGTTGATTTATGTTCATCTTGAGTGTGAGCATGTGGCGCTAAATGATTTAAATTAT
TTCATTGAACAATGTCCGGAAGACCCAATCAGTGAGATGATTCGTGCGCAAATCAATAATATCGCGCATAAACATATTGT
ATTGCACTAA

Upstream 100 bases:

>100_bases
GCAAAGCCAGTGGAAATGCTTAATTGCCCCCACCGGTGCTGGTGGTGCTGTACATCATCATTAAACTCGCCACCGCAAAA
TTGCGTAACTGGGGTAAGAG

Downstream 100 bases:

>100_bases
TTAATCGACATTTTACCTAAGTTTAAGGCGATTCTATGAAACAAAAAGTGGTTAGCATTGGCGATATTAACGTGGCGAAT
GACCTGCCATTTGTACTGTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKSLADFEFNKAPLCDGMILASENIRKDFPSCYVYDELNRLVSLAQEEIGEFLSQDAQLEKLLALFYGEWGFRQTQGVYR
LSDALWLDNVLNKRQGSAVSLGAILLWIANRLGLPLVPVIFPTQLILRIESQDGEMWLINPFNGETLDEHMLEVWLKGNI
SPDSELFFEDLDEADNSEVIRKLLDTLKSSLIEEDQMELALRTSEALLQFNPQDPYEIRDRGLIYVHLECEHVALNDLNY
FIEQCPEDPISEMIRAQINNIAHKHIVLH

Sequences:

>Translated_269_residues
MKSLADFEFNKAPLCDGMILASENIRKDFPSCYVYDELNRLVSLAQEEIGEFLSQDAQLEKLLALFYGEWGFRQTQGVYR
LSDALWLDNVLNKRQGSAVSLGAILLWIANRLGLPLVPVIFPTQLILRIESQDGEMWLINPFNGETLDEHMLEVWLKGNI
SPDSELFFEDLDEADNSEVIRKLLDTLKSSLIEEDQMELALRTSEALLQFNPQDPYEIRDRGLIYVHLECEHVALNDLNY
FIEQCPEDPISEMIRAQINNIAHKHIVLH
>Mature_269_residues
MKSLADFEFNKAPLCDGMILASENIRKDFPSCYVYDELNRLVSLAQEEIGEFLSQDAQLEKLLALFYGEWGFRQTQGVYR
LSDALWLDNVLNKRQGSAVSLGAILLWIANRLGLPLVPVIFPTQLILRIESQDGEMWLINPFNGETLDEHMLEVWLKGNI
SPDSELFFEDLDEADNSEVIRKLLDTLKSSLIEEDQMELALRTSEALLQFNPQDPYEIRDRGLIYVHLECEHVALNDLNY
FIEQCPEDPISEMIRAQINNIAHKHIVLH

Specific function: Not essential for the expression of the invasive phenotype. Required for maximal expression of sirC [H]

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=269, Percent_Identity=82.1561338289963, Blast_Score=461, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30953; Mature: 30953

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLADFEFNKAPLCDGMILASENIRKDFPSCYVYDELNRLVSLAQEEIGEFLSQDAQLE
CCCCCCCCCCCCCCCCCEEEECCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCHHHHH
KLLALFYGEWGFRQTQGVYRLSDALWLDNVLNKRQGSAVSLGAILLWIANRLGLPLVPVI
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEHHH
FPTQLILRIESQDGEMWLINPFNGETLDEHMLEVWLKGNISPDSELFFEDLDEADNSEVI
HHCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHH
RKLLDTLKSSLIEEDQMELALRTSEALLQFNPQDPYEIRDRGLIYVHLECEHVALNDLNY
HHHHHHHHHHHHCHHHHHHHHHHHHHHEECCCCCCHHHCCCCEEEEEEEECHHHHHHHHH
FIEQCPEDPISEMIRAQINNIAHKHIVLH
HHHHCCCCHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MKSLADFEFNKAPLCDGMILASENIRKDFPSCYVYDELNRLVSLAQEEIGEFLSQDAQLE
CCCCCCCCCCCCCCCCCEEEECCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCHHHHH
KLLALFYGEWGFRQTQGVYRLSDALWLDNVLNKRQGSAVSLGAILLWIANRLGLPLVPVI
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEHHH
FPTQLILRIESQDGEMWLINPFNGETLDEHMLEVWLKGNISPDSELFFEDLDEADNSEVI
HHCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHH
RKLLDTLKSSLIEEDQMELALRTSEALLQFNPQDPYEIRDRGLIYVHLECEHVALNDLNY
HHHHHHHHHHHHCHHHHHHHHHHHHHHEECCCCCCHHHCCCCEEEEEEEECHHHHHHHHH
FIEQCPEDPISEMIRAQINNIAHKHIVLH
HHHHCCCCHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]