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The map label for this gene is yciT [H]

Identifier: 218549022

GI number: 218549022

Start: 1717912

End: 1718745

Strand: Direct

Name: yciT [H]

Synonym: EFER_1670

Alternate gene names: 218549022

Gene position: 1717912-1718745 (Clockwise)

Preceding gene: 218549021

Following gene: 218549023

Centisome position: 37.44

GC content: 47.0

Gene sequence:

>834_bases
GTGGCACGCCTAAATCTCCATGGGAAATTTAATGCGTACCCATGCGGTTCACTCCTGAATTACTCCGATATTAAAACTAA
AACCATGAATTCTCGACAGCAAACAATATTACAGATGGTCATTGATAAGGGTCAGGTTAGCGTAGCAAAACTCGCCAAAG
TGACGGGTGTTTCTGAGGTAACCATCCGACAAGATCTTAATGCCCTTGAAAAAATGAGCTTTTTACGCCGTGCCCACGGT
TACGCCGTATCGCTGGACAGCGATGATGTCGAAACGCGGATGATGAGCAATTACACGCTCAAGCATAAGCTGGCACAGTA
CGCTGCTACGTTGGTGAACCCTGGCGAGTCCGTGTTTATCGAAAACGGCAGTTGCAATGCTCTGCTTGCCAGGGCGCTGG
CAGAGCAGAAAGATGTCACCATCATCACTGTCAGTAGCTATATCGCCCATCTTCTGAAAGAAACACCTTGTGAAATTATT
CTTCTCGGCGGCATCTACCAGAAAAAAAGCGAAAGTATGGTTGGGCCACTCACCCGCCAGTTCTTACAGCAGGTTCATTT
TAGTAAGGCATTCATTGGCATAGACGGTTGGCAAGCAGAAACTGGTTTTACTGGCCGCGATATGATGCGTTCTGACGTGG
TCAATGCGGTTCTGGAGAAAGGTGCTGAAGCCATTGTACTTACCGATAGTTCCAAGTTTGGTGCGTTACACCCTTATCCT
CTCGGTCCAGTCCACAAATTTAACCGCGTCATCACCGATGCCAAAATATCTCCCGATGCCCAAAAGTATATGGAGGATTC
AGGGTTGGCGGTTGATATCGTTGACATAAAATAA

Upstream 100 bases:

>100_bases
GTGCTGGATATCCTTGTGGCTGGAGATACCCATTCCGCCATTCATAATCTTGAGATTCTTAAGGCGGAATTATTAAGCAA
AGTTAAAGATAACGCTCAGA

Downstream 100 bases:

>100_bases
ACGTGTTTCCCCGATATATCTTGATGATTTGCCTTCTGGCAAATCATCTACTCTCTGAGATTTATCTTATCCCTTAATTA
AGACTTTTTACCTGTCTTTA

Product: HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MARLNLHGKFNAYPCGSLLNYSDIKTKTMNSRQQTILQMVIDKGQVSVAKLAKVTGVSEVTIRQDLNALEKMSFLRRAHG
YAVSLDSDDVETRMMSNYTLKHKLAQYAATLVNPGESVFIENGSCNALLARALAEQKDVTIITVSSYIAHLLKETPCEII
LLGGIYQKKSESMVGPLTRQFLQQVHFSKAFIGIDGWQAETGFTGRDMMRSDVVNAVLEKGAEAIVLTDSSKFGALHPYP
LGPVHKFNRVITDAKISPDAQKYMEDSGLAVDIVDIK

Sequences:

>Translated_277_residues
MARLNLHGKFNAYPCGSLLNYSDIKTKTMNSRQQTILQMVIDKGQVSVAKLAKVTGVSEVTIRQDLNALEKMSFLRRAHG
YAVSLDSDDVETRMMSNYTLKHKLAQYAATLVNPGESVFIENGSCNALLARALAEQKDVTIITVSSYIAHLLKETPCEII
LLGGIYQKKSESMVGPLTRQFLQQVHFSKAFIGIDGWQAETGFTGRDMMRSDVVNAVLEKGAEAIVLTDSSKFGALHPYP
LGPVHKFNRVITDAKISPDAQKYMEDSGLAVDIVDIK
>Mature_276_residues
ARLNLHGKFNAYPCGSLLNYSDIKTKTMNSRQQTILQMVIDKGQVSVAKLAKVTGVSEVTIRQDLNALEKMSFLRRAHGY
AVSLDSDDVETRMMSNYTLKHKLAQYAATLVNPGESVFIENGSCNALLARALAEQKDVTIITVSSYIAHLLKETPCEIIL
LGGIYQKKSESMVGPLTRQFLQQVHFSKAFIGIDGWQAETGFTGRDMMRSDVVNAVLEKGAEAIVLTDSSKFGALHPYPL
GPVHKFNRVITDAKISPDAQKYMEDSGLAVDIVDIK

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=249, Percent_Identity=79.1164658634538, Blast_Score=412, Evalue=1e-116,
Organism=Escherichia coli, GI1789519, Length=252, Percent_Identity=30.1587301587302, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789059, Length=248, Percent_Identity=29.8387096774194, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI226510968, Length=240, Percent_Identity=28.3333333333333, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789829, Length=247, Percent_Identity=26.3157894736842, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082344, Length=249, Percent_Identity=24.4979919678715, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788069, Length=235, Percent_Identity=25.9574468085106, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790635, Length=255, Percent_Identity=27.0588235294118, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790753, Length=241, Percent_Identity=26.9709543568465, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787063, Length=253, Percent_Identity=26.4822134387352, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=25, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30531; Mature: 30399

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLNLHGKFNAYPCGSLLNYSDIKTKTMNSRQQTILQMVIDKGQVSVAKLAKVTGVSEV
CCEEECCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
TIRQDLNALEKMSFLRRAHGYAVSLDSDDVETRMMSNYTLKHKLAQYAATLVNPGESVFI
HHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEE
ENGSCNALLARALAEQKDVTIITVSSYIAHLLKETPCEIILLGGIYQKKSESMVGPLTRQ
ECCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCEEEECCCHHCCCCCHHHHHHHH
FLQQVHFSKAFIGIDGWQAETGFTGRDMMRSDVVNAVLEKGAEAIVLTDSSKFGALHPYP
HHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
LGPVHKFNRVITDAKISPDAQKYMEDSGLAVDIVDIK
CCHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEECC
>Mature Secondary Structure 
ARLNLHGKFNAYPCGSLLNYSDIKTKTMNSRQQTILQMVIDKGQVSVAKLAKVTGVSEV
CEEECCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHH
TIRQDLNALEKMSFLRRAHGYAVSLDSDDVETRMMSNYTLKHKLAQYAATLVNPGESVFI
HHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEE
ENGSCNALLARALAEQKDVTIITVSSYIAHLLKETPCEIILLGGIYQKKSESMVGPLTRQ
ECCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCEEEECCCHHCCCCCHHHHHHHH
FLQQVHFSKAFIGIDGWQAETGFTGRDMMRSDVVNAVLEKGAEAIVLTDSSKFGALHPYP
HHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
LGPVHKFNRVITDAKISPDAQKYMEDSGLAVDIVDIK
CCHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]