| Definition | Escherichia fergusonii ATCC 35469 chromosome, complete genome. |
|---|---|
| Accession | NC_011740 |
| Length | 4,588,711 |
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The map label for this gene is ydbH [H]
Identifier: 218548969
GI number: 218548969
Start: 1660747
End: 1663386
Strand: Reverse
Name: ydbH [H]
Synonym: EFER_1617
Alternate gene names: 218548969
Gene position: 1663386-1660747 (Counterclockwise)
Preceding gene: 218548972
Following gene: 218548968
Centisome position: 36.25
GC content: 50.95
Gene sequence:
>2640_bases ATGAAGGGTAAATATAAAGCCCTGGTGGCGCTTGTTTTACTGATCATTCTACTGCCGCTGACGCTGCTGATGACGCTCGG CTTGTGGGTTCCCACACTGGCGGGTATCTGGCTGCCAGTGGGTACACGTATCGCCCTGGACGAAAGCCCACGCATCACCC GGAAAGGGTTATCGATTCCCGATCTACGTTATCTGGTTAATGATTGCCAGCTGGCGCAGCTGAAACACGCAGAGCTTTCA CATCCGGATCGCTGGCAATTAGTGATCGGCGCTCTGGAAATTGATTCAGCCTGTCTGGCTAAACTACCGGAATCAGCACC TTCGCCCGCAGCACCAACAACGCTTGCTCAGTGGCAAGCAATGTTACCTAATACCTCGATCACTATCGACAAACTGGTGC TTTCGCCATGGCAAACCTGGCAGGGAAAACTCTCTCTTTCCCTGACTCCCGCCATTCAACAACTGCGTTATCAGGGAGAC AAGGTCAATATTCAGGGGCGATTACAAGGGCAAACCCTGGCAATCAGTGAATTTGCTATCGATGCCTTCGAGAACCTGCC GCCAGTCAAACTGGTGGGGGAATTCACCATGCCTCTTGTACCGGACGGGCTTCCAGTGAAAGGACGAGCTGTCGCCACAC TGAACTTGCCACAAGAACCCTCACTGGTAGATGCAGAACTGGAGTGGCGTGAGAATACCGGGCAACTCATTGTTATGGCG CGTGATAATGCCGATCCGCTGCTTGATCTTCCCTGGCTGATTACCCACGAACAATTCACTATCAGTGATGGTCGCTGGAA CTGGCCGTATCAGGGCTTCCCACTGAGTGGTCGTATGGGCATTAAAATTGATAACTGGCAGCAGGGACTGGAAAACGCGC TGATCAGTGGACGAATAAATGTTCTTACACAAGGTGAAGCGGGTAAGGGAAACGCAGTGCTGAACTTCGGCCCAGGTAAA TTGAGTATGGATAATAGTGTAATGCCCATGCAACTGACCGGGGAAGCGAAGCAAGGCAATCTTATTTTCTATGCCCGTTT ACCTGCGAAACTTACTGGTAGTCTCAGTGATCCGGCACTGGCCTTTGAACCTGGTGCATTGCTGCGTTCGCGTGGTCGTT TGATTGATTCTCTGGATATCGACGAAATTCGCTGGCCCCTGGCAGGTGTGAAAGTTACGCAACGCGGGGTGGATGGACGA TTGCAAGCCATATTGCAGGCCCATGAGAATGAATTGGGCGATTTCGTGTTACACATGGATGGCCTGGCCAACGATTTCCT TCCAGATGCCGGGCGCTGGCAGTGGCGTTACTGGGGCAATGGTCGTTTTACGCCAATGAATGCGCGTTGGGATGTCGCTG GTAAAGGGGAATGGCATGACAACACTATCACTTTGAATGATCTTTCTACCGGCTTCGATCAACTGCAATACGGCACCATG AAGGTTGAAAGCCCACGACTGATTCTCGACAAACCCGTCGTTTGGGTACGTGATGTGCAGAATCCTTCGTTTAGTGGCGC ACTCTCACTGGATGCCGGACAGACGCTTTTCACGGGTGGCAGTGTATTGCCGCCATCAACCTTAAAATTCAGTGTTGAAG GACGCGAGCCAACTTATTTTCTCTTTAAAGGTGATTTACATGCCGGCGCTATTGGCCCGGTACGGGTAAATGGTCGCTGG GATGGTATTCGCCTGCGCGGTAACGCATGGTGGCCAAAGCAATCGCTAACTGTGTTCCAGCCATTAGTGCCGCCAGACTG GAAGATGAAACTGCGCGATGGGGAGTTGTATGCCCAGGTGGCGTTTTCTGCTGCCCCTGATCAAGGATTTCGTGCGGGTG GTCATGGTGTGTTGAAAGACGGTAGCGCCTGGATGCCAGATAACAAAGTCAACGGTGTTGATTTTGTTTTGCCGTTCCGC TTTGGCGATGGTGCCTGGCATCTGGGGACTCGTGGCCCCGTTACGTTGCGAATTGCCGAAGTGATTAATCTGGTGACAGC GAAAAATATTACGGCTGATTTGCAAGGGCGCTATCCGTGGACTGAAGAAGAACCATTGCTGTTGACCGATGTTAGCGTCG ATGTGTTAGGCGGTAACGTGCTGATGAAACAATTACGGATGCCGCAGCATGATCCGGCGTTGCTGCGGTTGAATAACCTC TCATCCAGCGAGTTGGTTAGCGCCGTCAACCCGAAACAATTCGCTATGTCCGGGGCATTTAGTGGTGCATTGCCGTTATG GCTGAACAATGAAAAATGGATTGTGAAAGATGGCTGGCTGGCGAATAGCGGGCCGATGACATTGCGACTGGATAAAGACA CCGCAGATGCGGTGGTAAAAGACAATATGACGGCAGGTTCAGCGATCAACTGGCTACGTTATATGGAAATTAGCCGGTCA TCGACAAAAATTAACTTAGATAATTTGGGTGTGTTAACGATGCAGGCAACCATTACTGGTAACAGTCGGGTCGATGGCAA AACAGGCACGGTAAATCTCAATTACAACCATGAAGAGAATATTTTTACGCTGTGGCGCAGTTTACGCTTCGGCGATAATC TCCAGACATGGCTGGAGCAGAACGCGCATCTACCTGTAAATGACTGTCCACAAGGAAAAGAGTGTGAGGAAAAACAATGA
Upstream 100 bases:
>100_bases TATGCTAATTGTAGGCGTAACCTTCAACTGAACGGGCAAACATGCCACAATACGCGCCTTTACTGGCTAAATTTTCGCTA AATCAGGATATTAACTACCC
Downstream 100 bases:
>100_bases AAATATTACTTGCTGCGTTGACGTCGTCTTTTCTGCTGGTTGCCTGCACTCCGCGTATTGAAGTCGCTGCGCCCAAGGAA CCGATCACTATCAATATGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MKGKYKALVALVLLIILLPLTLLMTLGLWVPTLAGIWLPVGTRIALDESPRITRKGLSIPDLRYLVNDCQLAQLKHAELS HPDRWQLVIGALEIDSACLAKLPESAPSPAAPTTLAQWQAMLPNTSITIDKLVLSPWQTWQGKLSLSLTPAIQQLRYQGD KVNIQGRLQGQTLAISEFAIDAFENLPPVKLVGEFTMPLVPDGLPVKGRAVATLNLPQEPSLVDAELEWRENTGQLIVMA RDNADPLLDLPWLITHEQFTISDGRWNWPYQGFPLSGRMGIKIDNWQQGLENALISGRINVLTQGEAGKGNAVLNFGPGK LSMDNSVMPMQLTGEAKQGNLIFYARLPAKLTGSLSDPALAFEPGALLRSRGRLIDSLDIDEIRWPLAGVKVTQRGVDGR LQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGNGRFTPMNARWDVAGKGEWHDNTITLNDLSTGFDQLQYGTM KVESPRLILDKPVVWVRDVQNPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVEGREPTYFLFKGDLHAGAIGPVRVNGRW DGIRLRGNAWWPKQSLTVFQPLVPPDWKMKLRDGELYAQVAFSAAPDQGFRAGGHGVLKDGSAWMPDNKVNGVDFVLPFR FGDGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNL SSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEISRS STKINLDNLGVLTMQATITGNSRVDGKTGTVNLNYNHEENIFTLWRSLRFGDNLQTWLEQNAHLPVNDCPQGKECEEKQ
Sequences:
>Translated_879_residues MKGKYKALVALVLLIILLPLTLLMTLGLWVPTLAGIWLPVGTRIALDESPRITRKGLSIPDLRYLVNDCQLAQLKHAELS HPDRWQLVIGALEIDSACLAKLPESAPSPAAPTTLAQWQAMLPNTSITIDKLVLSPWQTWQGKLSLSLTPAIQQLRYQGD KVNIQGRLQGQTLAISEFAIDAFENLPPVKLVGEFTMPLVPDGLPVKGRAVATLNLPQEPSLVDAELEWRENTGQLIVMA RDNADPLLDLPWLITHEQFTISDGRWNWPYQGFPLSGRMGIKIDNWQQGLENALISGRINVLTQGEAGKGNAVLNFGPGK LSMDNSVMPMQLTGEAKQGNLIFYARLPAKLTGSLSDPALAFEPGALLRSRGRLIDSLDIDEIRWPLAGVKVTQRGVDGR LQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGNGRFTPMNARWDVAGKGEWHDNTITLNDLSTGFDQLQYGTM KVESPRLILDKPVVWVRDVQNPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVEGREPTYFLFKGDLHAGAIGPVRVNGRW DGIRLRGNAWWPKQSLTVFQPLVPPDWKMKLRDGELYAQVAFSAAPDQGFRAGGHGVLKDGSAWMPDNKVNGVDFVLPFR FGDGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNL SSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEISRS STKINLDNLGVLTMQATITGNSRVDGKTGTVNLNYNHEENIFTLWRSLRFGDNLQTWLEQNAHLPVNDCPQGKECEEKQ >Mature_879_residues MKGKYKALVALVLLIILLPLTLLMTLGLWVPTLAGIWLPVGTRIALDESPRITRKGLSIPDLRYLVNDCQLAQLKHAELS HPDRWQLVIGALEIDSACLAKLPESAPSPAAPTTLAQWQAMLPNTSITIDKLVLSPWQTWQGKLSLSLTPAIQQLRYQGD KVNIQGRLQGQTLAISEFAIDAFENLPPVKLVGEFTMPLVPDGLPVKGRAVATLNLPQEPSLVDAELEWRENTGQLIVMA RDNADPLLDLPWLITHEQFTISDGRWNWPYQGFPLSGRMGIKIDNWQQGLENALISGRINVLTQGEAGKGNAVLNFGPGK LSMDNSVMPMQLTGEAKQGNLIFYARLPAKLTGSLSDPALAFEPGALLRSRGRLIDSLDIDEIRWPLAGVKVTQRGVDGR LQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGNGRFTPMNARWDVAGKGEWHDNTITLNDLSTGFDQLQYGTM KVESPRLILDKPVVWVRDVQNPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVEGREPTYFLFKGDLHAGAIGPVRVNGRW DGIRLRGNAWWPKQSLTVFQPLVPPDWKMKLRDGELYAQVAFSAAPDQGFRAGGHGVLKDGSAWMPDNKVNGVDFVLPFR FGDGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNL SSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEISRS STKINLDNLGVLTMQATITGNSRVDGKTGTVNLNYNHEENIFTLWRSLRFGDNLQTWLEQNAHLPVNDCPQGKECEEKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787646, Length=879, Percent_Identity=87.7133105802048, Blast_Score=1560, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021730 [H]
Pfam domain/function: PF11739 DctA-YdbH [H]
EC number: NA
Molecular weight: Translated: 97184; Mature: 97184
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGKYKALVALVLLIILLPLTLLMTLGLWVPTLAGIWLPVGTRIALDESPRITRKGLSIP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCC DLRYLVNDCQLAQLKHAELSHPDRWQLVIGALEIDSACLAKLPESAPSPAAPTTLAQWQA HHHHHHCCHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHH MLPNTSITIDKLVLSPWQTWQGKLSLSLTPAIQQLRYQGDKVNIQGRLQGQTLAISEFAI HCCCCCEEEEHEEECCCCCCCCEEEEEECHHHHHHHCCCCEEEEEEEECCCEEEEHHHHH DAFENLPPVKLVGEFTMPLVPDGLPVKGRAVATLNLPQEPSLVDAELEWRENTGQLIVMA HHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEE RDNADPLLDLPWLITHEQFTISDGRWNWPYQGFPLSGRMGIKIDNWQQGLENALISGRIN CCCCCCCCCCCEEEECCEEEECCCEECCCCCCCCCCCEEEEEECHHHHHHHHHHHCCEEE VLTQGEAGKGNAVLNFGPGKLSMDNSVMPMQLTGEAKQGNLIFYARLPAKLTGSLSDPAL EEECCCCCCCCEEEEECCCCEECCCCEEEEEEECCCCCCCEEEEEECCHHCCCCCCCCCE AFEPGALLRSRGRLIDSLDIDEIRWPLAGVKVTQRGVDGRLQAILQAHENELGDFVLHMD EECCCHHHHHCCCEECCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC GLANDFLPDAGRWQWRYWGNGRFTPMNARWDVAGKGEWHDNTITLNDLSTGFDQLQYGTM CCCHHCCCCCCCEEEEEECCCEEECCCCEEECCCCCCCCCCEEEECCCCCCHHHHCCCEE KVESPRLILDKPVVWVRDVQNPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVEGREPTYF EECCCCEEECCCEEEEEECCCCCCCCEEEECCCCEEEECCCCCCCCCEEEEECCCCCEEE LFKGDLHAGAIGPVRVNGRWDGIRLRGNAWWPKQSLTVFQPLVPPDWKMKLRDGELYAQV EEECCCCCCCCCEEEECCEECCEEEECCCCCCCCCCEEEECCCCCCCEEEEECCEEEEEE AFSAAPDQGFRAGGHGVLKDGSAWMPDNKVNGVDFVLPFRFGDGAWHLGTRGPVTLRIAE EEECCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCCEEEEHHH VINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNL HHHHHHHCCCEEECCCCCCCCCCCCEEEEECEEEEECHHHHHHHHCCCCCCCCEEEECCC SSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVK CHHHHHHHCCCHHHEECCCCCCCCEEEECCCEEEEECCEEECCCCEEEEECCCCCCHHEE DNMTAGSAINWLRYMEISRSSTKINLDNLGVLTMQATITGNSRVDGKTGTVNLNYNHEEN CCCCCCCHHHHHHEEEECCCCCEEEECCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCC IFTLWRSLRFGDNLQTWLEQNAHLPVNDCPQGKECEEKQ HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKGKYKALVALVLLIILLPLTLLMTLGLWVPTLAGIWLPVGTRIALDESPRITRKGLSIP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCCCCC DLRYLVNDCQLAQLKHAELSHPDRWQLVIGALEIDSACLAKLPESAPSPAAPTTLAQWQA HHHHHHCCHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHH MLPNTSITIDKLVLSPWQTWQGKLSLSLTPAIQQLRYQGDKVNIQGRLQGQTLAISEFAI HCCCCCEEEEHEEECCCCCCCCEEEEEECHHHHHHHCCCCEEEEEEEECCCEEEEHHHHH DAFENLPPVKLVGEFTMPLVPDGLPVKGRAVATLNLPQEPSLVDAELEWRENTGQLIVMA HHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEE RDNADPLLDLPWLITHEQFTISDGRWNWPYQGFPLSGRMGIKIDNWQQGLENALISGRIN CCCCCCCCCCCEEEECCEEEECCCEECCCCCCCCCCCEEEEEECHHHHHHHHHHHCCEEE VLTQGEAGKGNAVLNFGPGKLSMDNSVMPMQLTGEAKQGNLIFYARLPAKLTGSLSDPAL EEECCCCCCCCEEEEECCCCEECCCCEEEEEEECCCCCCCEEEEEECCHHCCCCCCCCCE AFEPGALLRSRGRLIDSLDIDEIRWPLAGVKVTQRGVDGRLQAILQAHENELGDFVLHMD EECCCHHHHHCCCEECCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC GLANDFLPDAGRWQWRYWGNGRFTPMNARWDVAGKGEWHDNTITLNDLSTGFDQLQYGTM CCCHHCCCCCCCEEEEEECCCEEECCCCEEECCCCCCCCCCEEEECCCCCCHHHHCCCEE KVESPRLILDKPVVWVRDVQNPSFSGALSLDAGQTLFTGGSVLPPSTLKFSVEGREPTYF EECCCCEEECCCEEEEEECCCCCCCCEEEECCCCEEEECCCCCCCCCEEEEECCCCCEEE LFKGDLHAGAIGPVRVNGRWDGIRLRGNAWWPKQSLTVFQPLVPPDWKMKLRDGELYAQV EEECCCCCCCCCEEEECCEECCEEEECCCCCCCCCCEEEECCCCCCCEEEEECCEEEEEE AFSAAPDQGFRAGGHGVLKDGSAWMPDNKVNGVDFVLPFRFGDGAWHLGTRGPVTLRIAE EEECCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEEECCCEEECCCCCCEEEEHHH VINLVTAKNITADLQGRYPWTEEEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNL HHHHHHHCCCEEECCCCCCCCCCCCEEEEECEEEEECHHHHHHHHCCCCCCCCEEEECCC SSSELVSAVNPKQFAMSGAFSGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVK CHHHHHHHCCCHHHEECCCCCCCCEEEECCCEEEEECCEEECCCCEEEEECCCCCCHHEE DNMTAGSAINWLRYMEISRSSTKINLDNLGVLTMQATITGNSRVDGKTGTVNLNYNHEEN CCCCCCCHHHHHHEEEECCCCCEEEECCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCC IFTLWRSLRFGDNLQTWLEQNAHLPVNDCPQGKECEEKQ HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 9025293 [H]