Click here to switch to the map view.

The map label for this gene is ynfB

Identifier: 218548878

GI number: 218548878

Start: 1557780

End: 1558121

Strand: Reverse

Name: ynfB

Synonym: EFER_1523

Alternate gene names: 218548878

Gene position: 1558121-1557780 (Counterclockwise)

Preceding gene: 218548889

Following gene: 218548877

Centisome position: 33.96

GC content: 48.25

Gene sequence:

>342_bases
ATGAACATACTTTCAGGCAAATTGCCATTTCTGCTCGGTGCTGTATTCGCAGGTAGCGTAGTACTTGCCACCTCCGTACA
GGCTGAAACCAGTAAGTTGATCATCGAATCCGGTGATAGTGCCCAAAGCCGCCAGCACGCCAGTATGGAAAAAGAGCAAT
GGAATGATACCCGAATGCTACGGCAAAAAGTGAATAAACGTACTGAGAAAGAGTGGGATAAGGCAGACGCTGCATTTGAT
AACCGTGATAAATGTGAGCAAAGCAGCAACATTAACGCCTACTGGGAACCTAATACCCTGCGCTGCCTGGATCGTCGTAC
AGGACGCGTTATCACACCCTAG

Upstream 100 bases:

>100_bases
ATCCGACGTGTTCTGACCTGATTACGGGTAGGATTTCGACAGATTATGAAACTAATTGCACTCATAGTGAGTATTTATTC
TGCTAACTCAGGACGTTACC

Downstream 100 bases:

>100_bases
TAAATCAATAAGTTAAAGGAATATCATACAATGACAAGCGCCCATAGTGTTAAGTTACGCCCTCTGGAGCGTGAGGATTT
GCGTTACGTGCACCAGCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MNILSGKLPFLLGAVFAGSVVLATSVQAETSKLIIESGDSAQSRQHASMEKEQWNDTRMLRQKVNKRTEKEWDKADAAFD
NRDKCEQSSNINAYWEPNTLRCLDRRTGRVITP

Sequences:

>Translated_113_residues
MNILSGKLPFLLGAVFAGSVVLATSVQAETSKLIIESGDSAQSRQHASMEKEQWNDTRMLRQKVNKRTEKEWDKADAAFD
NRDKCEQSSNINAYWEPNTLRCLDRRTGRVITP
>Mature_113_residues
MNILSGKLPFLLGAVFAGSVVLATSVQAETSKLIIESGDSAQSRQHASMEKEQWNDTRMLRQKVNKRTEKEWDKADAAFD
NRDKCEQSSNINAYWEPNTLRCLDRRTGRVITP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0482 family

Homologues:

Organism=Escherichia coli, GI1787866, Length=113, Percent_Identity=78.7610619469027, Blast_Score=187, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNFB_ESCF3 (B7LRA0)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002382669.1
- EnsemblBacteria:   EBESCT00000122903
- GeneID:   7121807
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_1523
- GeneTree:   EBGT00050000010493
- HOGENOM:   HBG636731
- ProtClustDB:   PRK13659
- BioCyc:   EFER585054:EFER_1523-MONOMER
- HAMAP:   MF_01581
- InterPro:   IPR009700
- ProDom:   PD073251

Pfam domain/function: PF06932 DUF1283

EC number: NA

Molecular weight: Translated: 12801; Mature: 12801

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILSGKLPFLLGAVFAGSVVLATSVQAETSKLIIESGDSAQSRQHASMEKEQWNDTRML
CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCHHHHHH
RQKVNKRTEKEWDKADAAFDNRDKCEQSSNINAYWEPNTLRCLDRRTGRVITP
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNILSGKLPFLLGAVFAGSVVLATSVQAETSKLIIESGDSAQSRQHASMEKEQWNDTRML
CCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCHHHHHH
RQKVNKRTEKEWDKADAAFDNRDKCEQSSNINAYWEPNTLRCLDRRTGRVITP
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA