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The map label for this gene is ynfD [H]

Identifier: 218548875

GI number: 218548875

Start: 1556064

End: 1556369

Strand: Reverse

Name: ynfD [H]

Synonym: EFER_1520

Alternate gene names: 218548875

Gene position: 1556369-1556064 (Counterclockwise)

Preceding gene: 218548877

Following gene: 218548867

Centisome position: 33.92

GC content: 49.35

Gene sequence:

>306_bases
ATGAAAAGAGCAAATTGCATTGTGGCTGTTACCCTGCTTACAGCTGCATTTTCCGCTATAGCCGCGCCCGAATCGTGTGA
ACGGATTAAGAGTGATATCGCACAACGTATCATCAATAACGGTGTGCCGGAGGCAAACTTCACACTAACAATTGTGCCTA
ATGATCAGGCTGATCAACCTGACTCTCAGGTTGTGGGCCATTGCGCCAACGACACACATAAAATTCTGTATGTACGTACC
AGCAGCGGCAATGCGCCTGCAAATGCCACACCATACCAGGACGCCCCAACCAGCGAGCCACAATAA

Upstream 100 bases:

>100_bases
ACGCCGTAACAAGAAGGTAGGCATCAATAATAGAGCAAATACATTAATTTACACGATAAATGCTATGATCTGCATAATAT
ATTGATTAAAGGAGTAGAAC

Downstream 100 bases:

>100_bases
GCCTTTAACCCACCCACTGAATATTCAGCATGGGTGGGAGCGTATGGCTAAAAAAGTGAAAACAGAAGTGCAACAGGCAA
GCTCATTGGCCAGGTGATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MKRANCIVAVTLLTAAFSAIAAPESCERIKSDIAQRIINNGVPEANFTLTIVPNDQADQPDSQVVGHCANDTHKILYVRT
SSGNAPANATPYQDAPTSEPQ

Sequences:

>Translated_101_residues
MKRANCIVAVTLLTAAFSAIAAPESCERIKSDIAQRIINNGVPEANFTLTIVPNDQADQPDSQVVGHCANDTHKILYVRT
SSGNAPANATPYQDAPTSEPQ
>Mature_101_residues
MKRANCIVAVTLLTAAFSAIAAPESCERIKSDIAQRIINNGVPEANFTLTIVPNDQADQPDSQVVGHCANDTHKILYVRT
SSGNAPANATPYQDAPTSEPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081940, Length=101, Percent_Identity=67.3267326732673, Blast_Score=130, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010595
- ProDom:   PD336997 [H]

Pfam domain/function: PF06649 DUF1161 [H]

EC number: NA

Molecular weight: Translated: 10736; Mature: 10736

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRANCIVAVTLLTAAFSAIAAPESCERIKSDIAQRIINNGVPEANFTLTIVPNDQADQP
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
DSQVVGHCANDTHKILYVRTSSGNAPANATPYQDAPTSEPQ
HHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRANCIVAVTLLTAAFSAIAAPESCERIKSDIAQRIINNGVPEANFTLTIVPNDQADQP
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
DSQVVGHCANDTHKILYVRTSSGNAPANATPYQDAPTSEPQ
HHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784 [H]