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The map label for this gene is ydcI [H]

Identifier: 218548855

GI number: 218548855

Start: 1535156

End: 1536079

Strand: Reverse

Name: ydcI [H]

Synonym: EFER_1500

Alternate gene names: 218548855

Gene position: 1536079-1535156 (Counterclockwise)

Preceding gene: 218548856

Following gene: 218548853

Centisome position: 33.48

GC content: 49.46

Gene sequence:

>924_bases
ATGGAAAAAAATAGTCTGTTTAGTCAGCGCATTCGCTTGCGCCACCTGCATACATTTGTCGCTGTCGCACAACAAGGAAC
ACTCGGTCGCGCGGCAGAAACCCTTAACCTTAGCCAGCCAGCTCTCTCTAAGACATTGAATGAACTGGAACAATTAACAG
GAACCCGGCTATTTGACCGAGGAAGACTTGGCGCGCAACTTACCCCACCTGGTGAGCAGTTTCTGACACATGCGGTGAAG
GTGCTGGATGCGTTAAATAATGCTGCTCAGGCGTTGAATCGAAAAGAGGGCCTTAACAGTGACATTGTGCGCATAGGCGC
GTTGCCAACCGCTGCATTAGGTATTTTACCTGCCGTATTAGGCCAGTTTCATCGCCAACATAAAGATACAATGTTGCAGG
TTGCTACCATGAATAACACCATGCTGTTGGCAGGGTTAAAGTCTGGCGAGATTGATATTGGTATCGGGCGAATGTCTGAT
CCAGAATTGATGGGTGGCCTCAATTACGAATTACTTTTTCTGGAGTCACTCAAACTGGTGGTGCGTCCGAATCACCCCCT
TTTACAGGAGAATGTCACTCTCAGTCGGGTGATGGAGTGGCCTGTCGTAGTTTCCCCAAAAGGTACGGTCCCCCGTCAGA
ATGCGGAAACACTGCTACAAAGCCAGGGCTGCAAAATTCCCGATGGCTGTATTGAAACGCTTTCCGCTTCACTATCACGA
CAGCTTACCGTCGATTACGACTATGTATGGTTTGTACCTTCCGGGGCAGTAAAAGAGGATTTGCGTCAGGGGTCTCTGGT
GGCACTGCCAGTGCCAACACAAGGTGCCGGAGAACCTATAGGTATCCTGACCCGTGTTGACGCACAGCTTTCATCCGGCG
CCCAAATATTAATTAGTGCGATCCGCAAAAATATGCCGTTGTAA

Upstream 100 bases:

>100_bases
TAATATAAAATCGCCAAATGTTAATGATATTTTGCAATCAAGTTATCATAATTAGATAACATATCTTGTCTTCGGCGCGA
CTCTGTTTTTAACATCGCTT

Downstream 100 bases:

>100_bases
AAGAAGGGCGACGCCTGCGCCCTGCTTTCTTGTCTAAAGAAAACACCGAAATTTGCCTTCCGCCCAAGGACTATATTTAC
CAGCAAGACCTAACCAGGAA

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFDRGRLGAQLTPPGEQFLTHAVK
VLDALNNAAQALNRKEGLNSDIVRIGALPTAALGILPAVLGQFHRQHKDTMLQVATMNNTMLLAGLKSGEIDIGIGRMSD
PELMGGLNYELLFLESLKLVVRPNHPLLQENVTLSRVMEWPVVVSPKGTVPRQNAETLLQSQGCKIPDGCIETLSASLSR
QLTVDYDYVWFVPSGAVKEDLRQGSLVALPVPTQGAGEPIGILTRVDAQLSSGAQILISAIRKNMPL

Sequences:

>Translated_307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFDRGRLGAQLTPPGEQFLTHAVK
VLDALNNAAQALNRKEGLNSDIVRIGALPTAALGILPAVLGQFHRQHKDTMLQVATMNNTMLLAGLKSGEIDIGIGRMSD
PELMGGLNYELLFLESLKLVVRPNHPLLQENVTLSRVMEWPVVVSPKGTVPRQNAETLLQSQGCKIPDGCIETLSASLSR
QLTVDYDYVWFVPSGAVKEDLRQGSLVALPVPTQGAGEPIGILTRVDAQLSSGAQILISAIRKNMPL
>Mature_307_residues
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFDRGRLGAQLTPPGEQFLTHAVK
VLDALNNAAQALNRKEGLNSDIVRIGALPTAALGILPAVLGQFHRQHKDTMLQVATMNNTMLLAGLKSGEIDIGIGRMSD
PELMGGLNYELLFLESLKLVVRPNHPLLQENVTLSRVMEWPVVVSPKGTVPRQNAETLLQSQGCKIPDGCIETLSASLSR
QLTVDYDYVWFVPSGAVKEDLRQGSLVALPVPTQGAGEPIGILTRVDAQLSSGAQILISAIRKNMPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=307, Percent_Identity=84.0390879478827, Blast_Score=538, Evalue=1e-154,
Organism=Escherichia coli, GI1787601, Length=297, Percent_Identity=27.2727272727273, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788887, Length=181, Percent_Identity=35.9116022099448, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=31.7180616740088, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=35.3846153846154, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788748, Length=179, Percent_Identity=30.7262569832402, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790262, Length=177, Percent_Identity=32.2033898305085, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=22.5694444444444, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI2367136, Length=150, Percent_Identity=32, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789506, Length=172, Percent_Identity=26.1627906976744, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790399, Length=297, Percent_Identity=23.9057239057239, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789204, Length=183, Percent_Identity=27.8688524590164, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788481, Length=214, Percent_Identity=26.1682242990654, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788296, Length=208, Percent_Identity=27.4038461538462, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33329; Mature: 33329

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFDR
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHC
GRLGAQLTPPGEQFLTHAVKVLDALNNAAQALNRKEGLNSDIVRIGALPTAALGILPAVL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHH
GQFHRQHKDTMLQVATMNNTMLLAGLKSGEIDIGIGRMSDPELMGGLNYELLFLESLKLV
HHHHHHHHHHEEEEEECCCEEEEEECCCCCEEEEECCCCCHHHHCCCCEEEEEEECCEEE
VRPNHPLLQENVTLSRVMEWPVVVSPKGTVPRQNAETLLQSQGCKIPDGCIETLSASLSR
ECCCCCCHHCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHC
QLTVDYDYVWFVPSGAVKEDLRQGSLVALPVPTQGAGEPIGILTRVDAQLSSGAQILISA
CEEEEEEEEEEECCCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECHHHCCCHHHHHHH
IRKNMPL
HHHCCCC
>Mature Secondary Structure
MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFDR
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHC
GRLGAQLTPPGEQFLTHAVKVLDALNNAAQALNRKEGLNSDIVRIGALPTAALGILPAVL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHH
GQFHRQHKDTMLQVATMNNTMLLAGLKSGEIDIGIGRMSDPELMGGLNYELLFLESLKLV
HHHHHHHHHHEEEEEECCCEEEEEECCCCCEEEEECCCCCHHHHCCCCEEEEEEECCEEE
VRPNHPLLQENVTLSRVMEWPVVVSPKGTVPRQNAETLLQSQGCKIPDGCIETLSASLSR
ECCCCCCHHCCCHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHC
QLTVDYDYVWFVPSGAVKEDLRQGSLVALPVPTQGAGEPIGILTRVDAQLSSGAQILISA
CEEEEEEEEEEECCCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECHHHCCCHHHHHHH
IRKNMPL
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]