Click here to switch to the map view.

The map label for this gene is opuCB [H]

Identifier: 218548807

GI number: 218548807

Start: 1488850

End: 1489500

Strand: Reverse

Name: opuCB [H]

Synonym: EFER_1446

Alternate gene names: 218548807

Gene position: 1489500-1488850 (Counterclockwise)

Preceding gene: 218548808

Following gene: 218548806

Centisome position: 32.46

GC content: 51.77

Gene sequence:

>651_bases
ATGGAGACGTTAAATTACCTTATTGATAATGCCGGATACCTTGCTGCCCTTACCTTACAGCACTTATGGCTGGTGGCCCT
TGCCGTCGGACTCGCCATTATTATCGGTATTCCACTGGGCATTTTAATTGTCCGTCATAAATGGCTGGCAACACCGATTC
TTGGAACCGCGACCTTGCTATTAACCATTCCATCGGTCGCACTTTTTGGCCTGATGATCCCACTCTTTTCACTGTTCGGT
CAGGGTATCGGCGCTCTCCCGGCGATTACCGCCGTGTTTCTCTACTCACTTTTGCCCATTGTGCGTAATACCCATACGGC
CCTTGATAGCCTGCCACCAGGTTTGCGTGAAGCTGGACGCGGCATAGGCATGACCTTCTGGCAACGCCTGCGTTGGGTTG
AGATCCCAATGGCCCTACCGGTTATTTTTGGTGGTATCCGCACGGCAGTAGTGATGAATATCGGCGTAATGGCCATTGCC
GCAGTGATTGGCGCAGGCGGTCTGGGGCTGTTGTTGCTTAATGGTATCGGCGGCAGCGATATGCGTATGTTGATTTCTGG
TGCGCTACTGATTTGTTTACTGGCTATTGTGCTCGACTGGCTGCTTCACCGTCTGCAGGTCGTACTGACTCCAAAGGGGA
TACGAAAATGA

Upstream 100 bases:

>100_bases
AATTTCTACGCTTAACGCCAAAGTCGATATCGACCATCAGTCGCCACAGCAGGTCGCCCGTGAATTCCTGCAACAGAAAA
ATTTGCTGTAAGGAGCGCAT

Downstream 100 bases:

>100_bases
TAAAACTAGAAAACCTCAGCAAACACTTCATTCAAAAACAGGGGCAGCCGCTGAAGGCTGTCGACAATGTCAATCTGAAC
GTTCCTGAAGGTGAAATGTG

Product: ABC transporter membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
METLNYLIDNAGYLAALTLQHLWLVALAVGLAIIIGIPLGILIVRHKWLATPILGTATLLLTIPSVALFGLMIPLFSLFG
QGIGALPAITAVFLYSLLPIVRNTHTALDSLPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIA
AVIGAGGLGLLLLNGIGGSDMRMLISGALLICLLAIVLDWLLHRLQVVLTPKGIRK

Sequences:

>Translated_216_residues
METLNYLIDNAGYLAALTLQHLWLVALAVGLAIIIGIPLGILIVRHKWLATPILGTATLLLTIPSVALFGLMIPLFSLFG
QGIGALPAITAVFLYSLLPIVRNTHTALDSLPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIA
AVIGAGGLGLLLLNGIGGSDMRMLISGALLICLLAIVLDWLLHRLQVVLTPKGIRK
>Mature_216_residues
METLNYLIDNAGYLAALTLQHLWLVALAVGLAIIIGIPLGILIVRHKWLATPILGTATLLLTIPSVALFGLMIPLFSLFG
QGIGALPAITAVFLYSLLPIVRNTHTALDSLPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIA
AVIGAGGLGLLLLNGIGGSDMRMLISGALLICLLAIVLDWLLHRLQVVLTPKGIRK

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=195, Percent_Identity=40, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788451, Length=204, Percent_Identity=37.2549019607843, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1789033, Length=186, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22990; Mature: 22990

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLNYLIDNAGYLAALTLQHLWLVALAVGLAIIIGIPLGILIVRHKWLATPILGTATLL
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTIPSVALFGLMIPLFSLFGQGIGALPAITAVFLYSLLPIVRNTHTALDSLPPGLREAGR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
GIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIAAVIGAGGLGLLLLNGIGGSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
MRMLISGALLICLLAIVLDWLLHRLQVVLTPKGIRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
METLNYLIDNAGYLAALTLQHLWLVALAVGLAIIIGIPLGILIVRHKWLATPILGTATLL
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTIPSVALFGLMIPLFSLFGQGIGALPAITAVFLYSLLPIVRNTHTALDSLPPGLREAGR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
GIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIAAVIGAGGLGLLLLNGIGGSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
MRMLISGALLICLLAIVLDWLLHRLQVVLTPKGIRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]