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The map label for this gene is ydgC [H]

Identifier: 218548791

GI number: 218548791

Start: 1470621

End: 1470962

Strand: Direct

Name: ydgC [H]

Synonym: EFER_1430

Alternate gene names: 218548791

Gene position: 1470621-1470962 (Clockwise)

Preceding gene: 218548787

Following gene: 218548795

Centisome position: 32.05

GC content: 44.74

Gene sequence:

>342_bases
ATGAGGATGGGTTTAGTATTCAAAGCTGCACTTGGTGCGCTGGTCGTGGTGTTGATAGGCTTACTGGCAAAAACAAAAAA
TTACTATATTGCAGGTTTAATTCCCTTATTTCCGACCTTTGCGTTGATTGCTCACTATATTGTGGCAAGCGAACGAGGGA
TTGAAGCATTACGAACAACCATCATCTTCAGTATGTGGTCGATCATTCCCTATTTTGTTTACCTGGCCTCTTTATGGTAT
CTCACCGGATTTATGCGCCTGCCCGCAGCACTCGGAGGGGCGGTTATCTGCTGGGGGCTTAGCGCATGGTTGTTAATTTT
CTGCTGGATAAAACTGCATTAA

Upstream 100 bases:

>100_bases
CTCACCATACACTGGCACGTTTTACCTGCATATCAATCGTTCCTAAACAAAAGAGCATAAGGTATTCTACTGAGAATATG
TTATTAAAGTGTTAAGGTGA

Downstream 100 bases:

>100_bases
CGCAGATGACGACCACCATCCAGGGGAAAACTACGCCCGGTAACAAAACAGCTTGTGAGCAAATAATCAACTAATTCAAT
TACTTCCTTTTCACCAGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MRMGLVFKAALGALVVVLIGLLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRTTIIFSMWSIIPYFVYLASLWY
LTGFMRLPAALGGAVICWGLSAWLLIFCWIKLH

Sequences:

>Translated_113_residues
MRMGLVFKAALGALVVVLIGLLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRTTIIFSMWSIIPYFVYLASLWY
LTGFMRLPAALGGAVICWGLSAWLLIFCWIKLH
>Mature_113_residues
MRMGLVFKAALGALVVVLIGLLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRTTIIFSMWSIIPYFVYLASLWY
LTGFMRLPAALGGAVICWGLSAWLLIFCWIKLH

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=111, Percent_Identity=87.3873873873874, Blast_Score=192, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 12627; Mature: 12627

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMGLVFKAALGALVVVLIGLLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRTT
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFSMWSIIPYFVYLASLWYLTGFMRLPAALGGAVICWGLSAWLLIFCWIKLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRMGLVFKAALGALVVVLIGLLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRTT
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIFSMWSIIPYFVYLASLWYLTGFMRLPAALGGAVICWGLSAWLLIFCWIKLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]