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The map label for this gene is slyA [H]

Identifier: 218548762

GI number: 218548762

Start: 1441082

End: 1441522

Strand: Direct

Name: slyA [H]

Synonym: EFER_1401

Alternate gene names: 218548762

Gene position: 1441082-1441522 (Clockwise)

Preceding gene: 218548758

Following gene: 218548764

Centisome position: 31.4

GC content: 48.3

Gene sequence:

>441_bases
ATGAAATTGGAATCGCCACTAGGTTCTGATCTGGCACGGTTGGTGCGCATATGGCGTGCTCTGATAGACCATCGCCTGAA
ACCTCTGGAATTAACTCAGACGCACTGGGTGACGCTACACAGCATTCATCAATTGCCGCCTGAACAATCACAAATTCAAC
TGGCTAAAGCGATTGGCATCGAACAGCCTTCCCTGGTGCGCACCTTAGATCAACTCGAAGAAAAAGGGTTGATTTCACGT
CAGACCTGCGCGAGCGATCGCCGGGCAAAACGCATTAAGTTGACGGAAAAAGCCGAGCCACTTATTGCAGATATGGAAGC
GGTGATCAACAAAACGCGCAGTGAAATTCTTGAAGGTATCGCACCAGAAGAAATTGAACTGTTGGTCAAACTGATTGCCC
GACTTGAACACAACATCATTACGCTACAGGCGCAAGGATAA

Upstream 100 bases:

>100_bases
CTGAGATTAATTAAATGGCGTAATATATTTGTTTTAGTAATGGAATTGCTGCAAACTATTATAAATGAGCATAATATCTT
AGCAAGCTAATTATAAGGAG

Downstream 100 bases:

>100_bases
ACTTCAGATAATTAAGGGGGCAGTAGTTGCCCCCTTTTGTCATTATTAGCGAGGAGAAACAGTGACCTGGCTACCGTTGC
TTGCCAGTACGACACGTTGA

Product: transcriptional regulator SlyA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHSIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISR
QTCASDRRAKRIKLTEKAEPLIADMEAVINKTRSEILEGIAPEEIELLVKLIARLEHNIITLQAQG

Sequences:

>Translated_146_residues
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHSIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISR
QTCASDRRAKRIKLTEKAEPLIADMEAVINKTRSEILEGIAPEEIELLVKLIARLEHNIITLQAQG
>Mature_146_residues
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHSIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISR
QTCASDRRAKRIKLTEKAEPLIADMEAVINKTRSEILEGIAPEEIELLVKLIARLEHNIITLQAQG

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=144, Percent_Identity=88.8888888888889, Blast_Score=257, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16568; Mature: 16568

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHSIHQLPPEQSQIQLAKAIGI
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIADMEAVINKTRSEILEGI
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHCC
APEEIELLVKLIARLEHNIITLQAQG
CCHHHHHHHHHHHHHCCCEEEEEECC
>Mature Secondary Structure
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHSIHQLPPEQSQIQLAKAIGI
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIADMEAVINKTRSEILEGI
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHCC
APEEIELLVKLIARLEHNIITLQAQG
CCHHHHHHHHHHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA