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The map label for this gene is yebA [H]

Identifier: 218548583

GI number: 218548583

Start: 1256836

End: 1258158

Strand: Direct

Name: yebA [H]

Synonym: EFER_1216

Alternate gene names: 218548583

Gene position: 1256836-1258158 (Clockwise)

Preceding gene: 218548582

Following gene: 218548584

Centisome position: 27.39

GC content: 51.47

Gene sequence:

>1323_bases
GTGCAACAGATAGCCCGCTCTGTCGCCCTGGCATTTAACAATTTGCCGCGACCTCACCGCGTTATGCTGGGGTCGCTTAC
CGTTCTTACATTGGCCGTCGCTGTCTGGCGGCCCTACGTTTACCATCGTGATGCCACGCCAATTGTCAAAACAATTGAGC
TGGAGCAAAACGAAATTCGCTCTCTGCTTCCGGAGGCCAGCGAGCCAATTGATCAGGCTGCGCAGGAAGATGAAGCCATT
CCACAGGATGAACTGGACGACAAAATCGCTGGTGAAGCGGGTGTTCATGAATATGTGGTTTCAACGGGTGATACGCTAAG
CAGTATCCTCAATCAATATGGTATTGATATGAGCGATATCACACAGTTGGCTGCTGCGGATAAAGAACTGCGCAATCTGA
AAATTGGTCAGCAGCTTTCCTGGACTTTGACCGCCGACGGTGATTTACAGCGCCTGACGTGGGAGGTTTCCCGCCGTGAA
ACTCGTACCTACGATCGCACGGCAACTAACGGCTTTAAAATGACCAGCGAAATGCAGCAGGGCGATTGGATCAACAGTGT
GATAAAAGGCACTGTTGGTGGTAGTTTCGTTACCAGCGCGAAAAATGCCGGTCTCACCAGCGCCGAAGTTAGCGCCGTGA
TTAAAGCGATGCAGTGGCAAATGGATTTCCGTAAGCTGAAAAAAGGCGATGAATTCTCGGTTCTGATGTCGCGGGAAATG
CTAGATGGTAAACGTGAACAGAGCCAGTTGTTGGGTGTGCGTTTACGCTCTGAAGGTAAAGACTATTATGCCTTCCGTGC
TGCCGACGGGAAATTCTATGATCGCAATGGTACCGGGCTGGCAAAAGGCTTCCTGCGTTTTCCGACGACTAAACAATTCC
GTATTTCTTCCAACTTCCACCCGCGCCGTGTGAATCCGGTGACCGGGCGTGTTGCTCCACATAAAGGTGTCGATTTCGCC
ATGCCGCAGGGTACTCCGGTACTGGCAGTGGGTGATGGTGAAGTGGTTGTTGCCAAGCGAAGTGGTGCAGCAGGTTACTA
CATTGCTATCCGTCATGGTCGCACGTACACCACTCGTTATATGCACCTGCGTAAGTTGTTAGTGAAACCGGGCCAGAAAG
TGAAACGGGGTGATCGTATTGCGCTTTCTGGTAACACCGGGCGCTCAACCGGGCCACATTTGCACTATGAAATGTGGATC
AACCAGCAGGCGGTTAACCCATTAACCGCGAAACTGCCGCGTACAGAAGGTCTGACGGGATCTGATCGCACTGAATATCT
GGCGCAGGTTAAAGAACTGCTACCGCAACTTCAGTTCGATTAA

Upstream 100 bases:

>100_bases
GAATATCAAACTGGGCAAAACGAGCTATTCAGCATTTTTGACCCAGGTCGCTAATCAATATGCGAGCTGCCTGAAAGGAG
AATAACGAGGAAGTGATTAC

Downstream 100 bases:

>100_bases
GAGAATTGCAGACAAAGCCGGTACGCAATATGTGCCGGCTTTTTTTATTTTGAATGGGGCAAGTTGCACCGCTACACTAT
CACCAGTTTGATATTGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMSDITQLAAADKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE
TRTYDRTATNGFKMTSEMQQGDWINSVIKGTVGGSFVTSAKNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFSVLMSREM
LDGKREQSQLLGVRLRSEGKDYYAFRAADGKFYDRNGTGLAKGFLRFPTTKQFRISSNFHPRRVNPVTGRVAPHKGVDFA
MPQGTPVLAVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEMWI
NQQAVNPLTAKLPRTEGLTGSDRTEYLAQVKELLPQLQFD

Sequences:

>Translated_440_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMSDITQLAAADKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE
TRTYDRTATNGFKMTSEMQQGDWINSVIKGTVGGSFVTSAKNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFSVLMSREM
LDGKREQSQLLGVRLRSEGKDYYAFRAADGKFYDRNGTGLAKGFLRFPTTKQFRISSNFHPRRVNPVTGRVAPHKGVDFA
MPQGTPVLAVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEMWI
NQQAVNPLTAKLPRTEGLTGSDRTEYLAQVKELLPQLQFD
>Mature_440_residues
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAI
PQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMSDITQLAAADKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE
TRTYDRTATNGFKMTSEMQQGDWINSVIKGTVGGSFVTSAKNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFSVLMSREM
LDGKREQSQLLGVRLRSEGKDYYAFRAADGKFYDRNGTGLAKGFLRFPTTKQFRISSNFHPRRVNPVTGRVAPHKGVDFA
MPQGTPVLAVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEMWI
NQQAVNPLTAKLPRTEGLTGSDRTEYLAQVKELLPQLQFD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=440, Percent_Identity=93.6363636363636, Blast_Score=867, Evalue=0.0,
Organism=Escherichia coli, GI87082174, Length=112, Percent_Identity=36.6071428571429, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789099, Length=96, Percent_Identity=38.5416666666667, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49100; Mature: 49100

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIR
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCHHHHH
SLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMSDI
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH
TQLAAADKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRETRTYDRTATNGFKMTSEMQQ
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHC
GDWINSVIKGTVGGSFVTSAKNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFSVLMSREM
CHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LDGKREQSQLLGVRLRSEGKDYYAFRAADGKFYDRNGTGLAKGFLRFPTTKQFRISSNFH
HCCHHHHHHHHHHHEECCCCCEEEEEECCCEEECCCCCCHHHHHHCCCCCCEEEECCCCC
PRRVNPVTGRVAPHKGVDFAMPQGTPVLAVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRY
CCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCEEEEECCCCCEEEEEEECCCCHHHHH
MHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEMWINQQAVNPLTAKLPRTEGLTG
HHHHHHHHCCCCHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHCCCHHHCCCCCCCCCC
SDRTEYLAQVKELLPQLQFD
CHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIR
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCHHHHH
SLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMSDI
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH
TQLAAADKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRETRTYDRTATNGFKMTSEMQQ
HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHC
GDWINSVIKGTVGGSFVTSAKNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFSVLMSREM
CHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LDGKREQSQLLGVRLRSEGKDYYAFRAADGKFYDRNGTGLAKGFLRFPTTKQFRISSNFH
HCCHHHHHHHHHHHEECCCCCEEEEEECCCEEECCCCCCHHHHHHCCCCCCEEEECCCCC
PRRVNPVTGRVAPHKGVDFAMPQGTPVLAVGDGEVVVAKRSGAAGYYIAIRHGRTYTTRY
CCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCEEEEECCCCCEEEEEEECCCCHHHHH
MHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEMWINQQAVNPLTAKLPRTEGLTG
HHHHHHHHCCCCHHCCCCEEEEECCCCCCCCCEEEEEEEECCHHCCCHHHCCCCCCCCCC
SDRTEYLAQVKELLPQLQFD
CHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]