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The map label for this gene is ycbZ [H]

Identifier: 218548464

GI number: 218548464

Start: 1136666

End: 1138426

Strand: Reverse

Name: ycbZ [H]

Synonym: EFER_1092

Alternate gene names: 218548464

Gene position: 1138426-1136666 (Counterclockwise)

Preceding gene: 218548466

Following gene: 218548463

Centisome position: 24.81

GC content: 49.63

Gene sequence:

>1761_bases
TTGACCATTACGAAACTTTCATGGCGCGATCTCGTTCCTGATACAGACAGTTATCAGGATATTTTTTCTCAGCCACATTT
AACGGACGAAAACGACACCTTACTCAGTGATACTCAGCCACGCCTGCTGTTTGCCCTGGAGCAACTAATGCAACCGTGGG
TCGCCTCCCCGTTTATGTTGGCAAAGGCCCCGGAAGAGCGCGAGTACCTGGAACTTCTGTCAGAAGCCACAAGCACCTTA
TTCAGTAATGCCAACCAACTAACAGGTGGGCATTATGAAATCTCCGGGAATAGTATTCGCTACAAACCGGCTACCCACCG
GGATGACAACTTTGCGACTATGACGCAGGTTGTCAGCGCCGACTGGGTTGAAGCGGAGCAACTGTTTGGCTGTCTGCGTC
AATTCAATGGCGATATCACTCTACAACCAGGCCTGGTACATCAGGCAAATGGTGGAGTGTTGATAATTTCGTTGCGCACT
CTACTTGCACAACCATTGCTGTGGATGCGTTTGAAATCCATTGTTACCCATGGACGATTTGACTGGGTTGCATTCGATGA
ATCTCGACCACTGCCAGTCTCTGTTCCTTCAATGCCACTTACCCTGAAAGTGATTTTGGTGGGGGAACGTGAACTACTGG
CTGATTTTCAGGAGATGGAACCAGAACTTTATGCCCAGGCAATTTACAGCGAATTCGAAGATACCTTACAGATTGTCGAT
GCCGGGTCGATGACGCAATGGTGTCAATGGGTAAGGCAAATCGCCACGCGTAAGAATCTGCCCTTACCTGCCACTGATGC
CTGGCAAGTACTGATTCGTGAAGGCGTGCGCTATACCGGTGAGCAAGAAACGTTACCACTTGATCCACAGTGGATTACAC
GTCAGTTAAAAGAAGTGGCGCCTTTGTGCGAAGGCAACACCTGTAGTGGCGAACAATTATCGCTCATGCTGGCACAAAGA
CAGTGGCGAGAAGGTTTCCTGGCTGAGCGGATGCAAGATGAAATCCTGCAAGAACAGATTCTGATTGAAACCGAAGGCGA
GCGTGTTGGGCAAATTAACGCCCTTTCGGTTATTGAATTTCCTGGGCATCCACGCGCTTTTGGCGAACCGTCACGCATCA
GCTGCGTTGTTCATATTGGCGATGGTGAATTTACTGACATCGAACGTAAAGCGGAACTCGGCGGCAATATTCACGCCAAA
GGGATGATGATCATGCAGGCGTTCCTGATGTCAGAACTGCAACTGGAACAGCAGATCCCTTTTTCGGCCTCGCTCACTTT
TGAACAGTCCTATAGTGAAGTTGATGGTGACAGCGCCTCAATGGCAGAGCTGTGTGCGTTAATCAGCGCCCTTGCCGATG
TTCCGGTTAATCAAAGCATTGCGATTACTGGATCTGTGGATCAGTTTGGGCGCGCCCAGCCGGTCGGTGGACTCAATGAA
AAAATTGAAGGCTTCTTCGCTATCTGCCAGCAGCGTGAGTTGTCTGGCAAGCAAGGGGTTATCATTCCGAGCGCAAACGT
GCGACATCTCAGCTTGCATAGTGAGTTGCTAAAAGCAGTTGAAGAAGAGAAATTCACTATCTGGGCGGTGGATGATGTCA
CTGATGCTTTACCGCTACTCTTAAATCTGGTGTGGGATGGTGAAGGCCAGACAACGTTGATGCAAACCATTCAGGAGCGT
ATTGCGCAAGCATCGCAACAGGAAGGTCGTCATCGTTTTCCCTGGCCATTACGCTGGCTGAACTGGTTTATCCCGAACTG
A

Upstream 100 bases:

>100_bases
ATACCGCTAACCCTTTATGTTAGTCTGTGCAATTCAGGTGTGCCGCCGGACCGCTTACGGTATAATCTTTCCTTTTACAA
TTGACTAAAAAATCTCAATT

Downstream 100 bases:

>100_bases
TCGGACTTGTTCAGCGTACACGTGTTAGCTATCCTGCGTGCTTCAATAAAATAAGGCTTACTGAGAACATGGTAGATAAA
CGCGAATCCTATACAAAAGA

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 586; Mature: 585

Protein sequence:

>586_residues
MTITKLSWRDLVPDTDSYQDIFSQPHLTDENDTLLSDTQPRLLFALEQLMQPWVASPFMLAKAPEEREYLELLSEATSTL
FSNANQLTGGHYEISGNSIRYKPATHRDDNFATMTQVVSADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGVLIISLRT
LLAQPLLWMRLKSIVTHGRFDWVAFDESRPLPVSVPSMPLTLKVILVGERELLADFQEMEPELYAQAIYSEFEDTLQIVD
AGSMTQWCQWVRQIATRKNLPLPATDAWQVLIREGVRYTGEQETLPLDPQWITRQLKEVAPLCEGNTCSGEQLSLMLAQR
QWREGFLAERMQDEILQEQILIETEGERVGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAK
GMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
KIEGFFAICQQRELSGKQGVIIPSANVRHLSLHSELLKAVEEEKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQER
IAQASQQEGRHRFPWPLRWLNWFIPN

Sequences:

>Translated_586_residues
MTITKLSWRDLVPDTDSYQDIFSQPHLTDENDTLLSDTQPRLLFALEQLMQPWVASPFMLAKAPEEREYLELLSEATSTL
FSNANQLTGGHYEISGNSIRYKPATHRDDNFATMTQVVSADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGVLIISLRT
LLAQPLLWMRLKSIVTHGRFDWVAFDESRPLPVSVPSMPLTLKVILVGERELLADFQEMEPELYAQAIYSEFEDTLQIVD
AGSMTQWCQWVRQIATRKNLPLPATDAWQVLIREGVRYTGEQETLPLDPQWITRQLKEVAPLCEGNTCSGEQLSLMLAQR
QWREGFLAERMQDEILQEQILIETEGERVGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAK
GMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
KIEGFFAICQQRELSGKQGVIIPSANVRHLSLHSELLKAVEEEKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQER
IAQASQQEGRHRFPWPLRWLNWFIPN
>Mature_585_residues
TITKLSWRDLVPDTDSYQDIFSQPHLTDENDTLLSDTQPRLLFALEQLMQPWVASPFMLAKAPEEREYLELLSEATSTLF
SNANQLTGGHYEISGNSIRYKPATHRDDNFATMTQVVSADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGVLIISLRTL
LAQPLLWMRLKSIVTHGRFDWVAFDESRPLPVSVPSMPLTLKVILVGERELLADFQEMEPELYAQAIYSEFEDTLQIVDA
GSMTQWCQWVRQIATRKNLPLPATDAWQVLIREGVRYTGEQETLPLDPQWITRQLKEVAPLCEGNTCSGEQLSLMLAQRQ
WREGFLAERMQDEILQEQILIETEGERVGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKG
MMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNEK
IEGFFAICQQRELSGKQGVIIPSANVRHLSLHSELLKAVEEEKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERI
AQASQQEGRHRFPWPLRWLNWFIPN

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=586, Percent_Identity=87.0307167235495, Blast_Score=1046, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.-

Molecular weight: Translated: 66023; Mature: 65892

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITKLSWRDLVPDTDSYQDIFSQPHLTDENDTLLSDTQPRLLFALEQLMQPWVASPFML
CCEECCCHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
AKAPEEREYLELLSEATSTLFSNANQLTGGHYEISGNSIRYKPATHRDDNFATMTQVVSA
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHHH
DWVEAEQLFGCLRQFNGDITLQPGLVHQANGGVLIISLRTLLAQPLLWMRLKSIVTHGRF
HHHHHHHHHHHHHHHCCCEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCE
DWVAFDESRPLPVSVPSMPLTLKVILVGERELLADFQEMEPELYAQAIYSEFEDTLQIVD
EEEEECCCCCCCEECCCCCEEEEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
AGSMTQWCQWVRQIATRKNLPLPATDAWQVLIREGVRYTGEQETLPLDPQWITRQLKEVA
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
PLCEGNTCSGEQLSLMLAQRQWREGFLAERMQDEILQEQILIETEGERVGQINALSVIEF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEEEC
PGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKGMMIMQAFLMSELQLEQQIP
CCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCC
FSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
CCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCCCCCCHH
KIEGFFAICQQRELSGKQGVIIPSANVRHLSLHSELLKAVEEEKFTIWAVDDVTDALPLL
HHHHHHHHHHHHHCCCCCCEEECCCCCEEHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHH
LNLVWDGEGQTTLMQTIQERIAQASQQEGRHRFPWPLRWLNWFIPN
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
TITKLSWRDLVPDTDSYQDIFSQPHLTDENDTLLSDTQPRLLFALEQLMQPWVASPFML
CEECCCHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
AKAPEEREYLELLSEATSTLFSNANQLTGGHYEISGNSIRYKPATHRDDNFATMTQVVSA
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHHH
DWVEAEQLFGCLRQFNGDITLQPGLVHQANGGVLIISLRTLLAQPLLWMRLKSIVTHGRF
HHHHHHHHHHHHHHHCCCEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCE
DWVAFDESRPLPVSVPSMPLTLKVILVGERELLADFQEMEPELYAQAIYSEFEDTLQIVD
EEEEECCCCCCCEECCCCCEEEEEEEECCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
AGSMTQWCQWVRQIATRKNLPLPATDAWQVLIREGVRYTGEQETLPLDPQWITRQLKEVA
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
PLCEGNTCSGEQLSLMLAQRQWREGFLAERMQDEILQEQILIETEGERVGQINALSVIEF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEEEC
PGHPRAFGEPSRISCVVHIGDGEFTDIERKAELGGNIHAKGMMIMQAFLMSELQLEQQIP
CCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCC
FSASLTFEQSYSEVDGDSASMAELCALISALADVPVNQSIAITGSVDQFGRAQPVGGLNE
CCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCCCCCCHH
KIEGFFAICQQRELSGKQGVIIPSANVRHLSLHSELLKAVEEEKFTIWAVDDVTDALPLL
HHHHHHHHHHHHHCCCCCCEEECCCCCEEHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHH
LNLVWDGEGQTTLMQTIQERIAQASQQEGRHRFPWPLRWLNWFIPN
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]