Click here to switch to the map view.

The map label for this gene is ycbX [H]

Identifier: 218548456

GI number: 218548456

Start: 1126773

End: 1127882

Strand: Reverse

Name: ycbX [H]

Synonym: EFER_1084

Alternate gene names: 218548456

Gene position: 1127882-1126773 (Counterclockwise)

Preceding gene: 218548463

Following gene: 218548453

Centisome position: 24.58

GC content: 50.63

Gene sequence:

>1110_bases
GTGGCGACATTAACCCGGCTTTTTATTCATCCTGTTAAATCGATGCGCGGCATTGGTCTTACACATGCTCTGGCAGATGT
CAGTGGTCTTGCCTTCGATCGCATCTTTATGATCACGGAACCTGACGGTACGTTTATTACCGCTCGCCAGTTTCCCCAGA
TGGTACGGTTTACTCCTTCACCTGTGCATGATGGCTTGCATCTCACCGCACCAGATGGCAGTAGCGCATATGTTCGTCTT
GCTGATTTCGCCACACAAGACGCCCCAACCGAAGTTTGGGGTACACATTTTACTGCGCGAATTGCACCGGACGCGATCAA
CAAATGGTTAAGTGGATTTTTCTCCCGCGAAGTCCAATTGCGCTGGGTGGGGCCACAAATGACCCGGCGCGTGAAACGCC
ACAACACTGTACCTCTGTCATTTGCTGATGGCTATCCTTACCTTCTTGCTAACGAAGCCTCGTTACGTGATCTCCAACAA
CGTTGTCCGGCCAGTGTAAAAATGGAGCAATTCCGCCCCAATCTGGTGGTTTCCGGTGCGTCGGCCTGGGAAGAAGATAG
CTGGAAAGTGATTCGTATTGGTGATGTGGTGTTTGATGTGGTTAAACCTTGTAGCCGCTGTATTTTCACCACCGTCAGCC
CAGAAAAAGGGCAAAAACATCCGGCAGGCGAACCATTAAAAACATTGCAATCTTTCCGAACAGCCCAGGATAACGGCGAT
GTCGATTTTGGTCAGAATTTAATTGCCCGTAATAGTGGCGTGATTCGCGTTGGCGACGAGGTGGAAATTCTGGCAACGGC
TCCGGCGAAAGTTTACGGCGCAGCTGCCGTGGACGATACCGTCGACGCCGCGCAGCAACCGGACGCAAATGTAGATATTG
ACTGGCAAGGGCAGGCATTTCGTGGAAATAACCAACAGGTTCTGCTGGAGCAATTAGAAAATCGGGGAATTCGTATCCCT
TATTCTTGCCGCGCGGGCATTTGTGGAAGCTGCCGTGTTCAGCTTTTAGAAGGCGAAGTCACACCGCTCAAAAAATCAGC
AATCAGCAATGATGGCACTATTCTTTGCTGTAGTTGTGTGCCGAAGACTGCGCTCAAACTAGCGCGTTAA

Upstream 100 bases:

>100_bases
CATATCGTCACTTTTACTCTAAGAAAATTGTTGCGCATTATAGCTAATAAGCGCGTCATGTCATAAAGTTGAGGGCTTAT
TTTCATTTGAGGACCGCACC

Downstream 100 bases:

>100_bases
ACTGCCTGTTCGAGGCTGAAACTGTCAACATTAACCTGCGGTTTCAGCCTGTCATTCATGATTTTGATGGCGTCCCCCAA
CTGCATCGCGCGACCAGCAA

Product: 2Fe-2S cluster-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRL
ADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
RCPASVKMEQFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
VDFGQNLIARNSGVIRVGDEVEILATAPAKVYGAAAVDDTVDAAQQPDANVDIDWQGQAFRGNNQQVLLEQLENRGIRIP
YSCRAGICGSCRVQLLEGEVTPLKKSAISNDGTILCCSCVPKTALKLAR

Sequences:

>Translated_369_residues
MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRL
ADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
RCPASVKMEQFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
VDFGQNLIARNSGVIRVGDEVEILATAPAKVYGAAAVDDTVDAAQQPDANVDIDWQGQAFRGNNQQVLLEQLENRGIRIP
YSCRAGICGSCRVQLLEGEVTPLKKSAISNDGTILCCSCVPKTALKLAR
>Mature_368_residues
ATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRLA
DFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQR
CPASVKMEQFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGDV
DFGQNLIARNSGVIRVGDEVEILATAPAKVYGAAAVDDTVDAAQQPDANVDIDWQGQAFRGNNQQVLLEQLENRGIRIPY
SCRAGICGSCRVQLLEGEVTPLKKSAISNDGTILCCSCVPKTALKLAR

Specific function: Unknown

COG id: COG3217

COG function: function code R; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MOSC domain [H]

Homologues:

Organism=Homo sapiens, GI224600454, Length=284, Percent_Identity=33.0985915492958, Blast_Score=138, Evalue=6e-33,
Organism=Homo sapiens, GI31542713, Length=280, Percent_Identity=31.0714285714286, Blast_Score=122, Evalue=4e-28,
Organism=Homo sapiens, GI157388923, Length=269, Percent_Identity=24.5353159851301, Blast_Score=79, Evalue=7e-15,
Organism=Escherichia coli, GI1787179, Length=369, Percent_Identity=96.4769647696477, Blast_Score=743, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17540702, Length=279, Percent_Identity=30.4659498207885, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17561286, Length=258, Percent_Identity=31.3953488372093, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71990971, Length=261, Percent_Identity=31.0344827586207, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25147498, Length=238, Percent_Identity=27.3109243697479, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI45550400, Length=290, Percent_Identity=29.6551724137931, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI17647607, Length=249, Percent_Identity=28.1124497991968, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR005302
- InterPro:   IPR005303
- InterPro:   IPR011037 [H]

Pfam domain/function: PF00111 Fer2; PF03473 MOSC; PF03476 MOSC_N [H]

EC number: NA

Molecular weight: Translated: 40540; Mature: 40408

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHCCHHHCCCCC
PVHDGLHLTAPDGSSAYVRLADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQL
CCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHCCCEEEEECHHHHHHHHHHHHCCCEEE
RWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGA
EEECHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHHCCCCCCHHHCCCCEEEECC
SAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
CCCCCCCEEEEEEHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
VDFGQNLIARNSGVIRVGDEVEILATAPAKVYGAAAVDDTVDAAQQPDANVDIDWQGQAF
CCCCCHHHHCCCCEEEECCCEEEEEECCHHHEECHHCCHHHHHHCCCCCCEEEEECCCEE
RGNNQQVLLEQLENRGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAISNDGTILCCSCV
CCCCHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCC
PKTALKLAR
CHHHHHHCC
>Mature Secondary Structure 
ATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPS
CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHCCHHHCCCCC
PVHDGLHLTAPDGSSAYVRLADFATQDAPTEVWGTHFTARIAPDAINKWLSGFFSREVQL
CCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHCCCEEEEECHHHHHHHHHHHHCCCEEE
RWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGA
EEECHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHHCCCCCCHHHCCCCEEEECC
SAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRTAQDNGD
CCCCCCCEEEEEEHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
VDFGQNLIARNSGVIRVGDEVEILATAPAKVYGAAAVDDTVDAAQQPDANVDIDWQGQAF
CCCCCHHHHCCCCEEEECCCEEEEEECCHHHEECHHCCHHHHHHCCCCCCEEEEECCCEE
RGNNQQVLLEQLENRGIRIPYSCRAGICGSCRVQLLEGEVTPLKKSAISNDGTILCCSCV
CCCCHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCC
PKTALKLAR
CHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]