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The map label for this gene is ssuC [H]

Identifier: 218548450

GI number: 218548450

Start: 1121341

End: 1122132

Strand: Reverse

Name: ssuC [H]

Synonym: EFER_1078

Alternate gene names: 218548450

Gene position: 1122132-1121341 (Counterclockwise)

Preceding gene: 218548451

Following gene: 218548449

Centisome position: 24.45

GC content: 55.56

Gene sequence:

>792_bases
ATGGCAACGCCAGTCAAGAAGTGGTTATTGCGCGTTGCCCCCTGGTTTTTACCGGTGGGCATCGTGGCGGTGTGGCAACT
GGCCTCCTCGGTTGGCTGGCTGTCGACGCGTATTTTGCCCTCTCCGGAAGGAGTGATGACGGCGTTCTGGACGCTCTCCG
CCAGCGGCGAATTGTGGCAGCATCTGGCGATCAGCTCCTGGCGGGCGTTGATTGGCTTTTCAATTGGCGGATCGCTGGGG
TTGATTCTGGGACTGATAAGCGGACTGTCGCGCTGGGGAGAAAGGCTGCTGGATACCTCAATTCAGATGTTGCGCAACGT
GCCGCATCTGGCGCTGATCCCGCTGGTGATTTTGTGGTTTGGCATTGATGAATCCGCAAAAATCTTTCTGGTGGCGCTCG
GCACGCTATTCCCCATTTATATCAACACCTGGCACGGAATCCGTAATATCGATCGCGGTCTGGTGGAAATGGCGCGTAGC
TATGGATTATCCGGCATACCGCTGTTTATCCATGTGATCCTGCCTGGTGCCCTGCCCTCAATTATGGTCGGCGTACGTTT
TGCGTTGGACCTGATGTGGCTGACGCTGATTGTTGCCGAAACCATTTCTGCCAATTCCGGCATTGGTTATCTGGCGATGA
ATGCGCGGGAGTTTTTGCAAACGGATGTGGTGGTAGTCGCCATTATTCTCTACGCCCTGCTCGGCAAACTTGCTGACGTC
AGCGCGCAGCTGTTAGAGCGCCTCTGGCTGCGCTGGAATCCGGCTTATCATTTGAAGGAGGCCACGGTATGA

Upstream 100 bases:

>100_bases
TCCCGGAAATTCCTCAGCCACAACTGCTGAATCCGCAAGGCGAAGCGGTGGCGAATGATTTCATCCCCCGTAACGTCGCG
CAAAGCTAAGGAACAAGATA

Downstream 100 bases:

>100_bases
ATACTGCTCGTCTGAACCAGGGCACACCCTTGTTACTCAATGCAGTAAGCAAACATTACGCGAAAAATATCGTCCTGAAC
CAACTGGATTTACATATTCC

Product: alkanesulfonate transporter permease subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVMTAFWTLSASGELWQHLAISSWRALIGFSIGGSLG
LILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS
YGLSGIPLFIHVILPGALPSIMVGVRFALDLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV
SAQLLERLWLRWNPAYHLKEATV

Sequences:

>Translated_263_residues
MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVMTAFWTLSASGELWQHLAISSWRALIGFSIGGSLG
LILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS
YGLSGIPLFIHVILPGALPSIMVGVRFALDLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV
SAQLLERLWLRWNPAYHLKEATV
>Mature_262_residues
ATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVMTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGL
ILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSY
GLSGIPLFIHVILPGALPSIMVGVRFALDLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVS
AQLLERLWLRWNPAYHLKEATV

Specific function: Part of a binding-protein-dependent transport system for aliphatic sulfonates. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=263, Percent_Identity=99.2395437262358, Blast_Score=507, Evalue=1e-145,
Organism=Escherichia coli, GI1786564, Length=238, Percent_Identity=34.0336134453782, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29016; Mature: 28885

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVMTAFWTLSASGELWQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHH
HLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
IMVGVRFALDLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
SAQLLERLWLRWNPAYHLKEATV
HHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVMTAFWTLSASGELWQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHH
HLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWF
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
IMVGVRFALDLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
SAQLLERLWLRWNPAYHLKEATV
HHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10506196; 8905232; 9278503 [H]