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The map label for this gene is yfdC [H]

Identifier: 218548200

GI number: 218548200

Start: 833333

End: 834274

Strand: Reverse

Name: yfdC [H]

Synonym: EFER_0817

Alternate gene names: 218548200

Gene position: 834274-833333 (Counterclockwise)

Preceding gene: 218548202

Following gene: 218548199

Centisome position: 18.18

GC content: 44.59

Gene sequence:

>942_bases
ATGGACAAACTTGATAGCGGTAAAATCGATCATCATAGCGATGAACTTGAAGTTGAAAGTGAAGAAAAGGCCAGTGGAAA
AAAAATAGAAGTCGATGAAGATCGCCTTCCGTCAAGGGCCATGGCGATCCATGAGCATATTCGTCAGGATGGTGAAAAAG
AACTGGAACGCGATGCGATGGCATTACTCTGGTCCGCGATTGCGGCGGGGCTGTCGATGGGAGCGTCTTTACTGGCGAAA
GGTATCTTCCACGTTCAACTGGATGGTATTCCTGGCAGTTTTTTACTGGAAAATATTGGTTATACCTTTGGTTTTATTAT
TGTCATTATGGCGCGCCAGCAGTTATTTACTGAAAATACCGTTACCGCGGTATTACCCGTAATGCAAAAGCCTACGCCGG
GCAATTTTGGTTTACTGATGCGCCTGTGGAGCGTGGTATTACTGGGAAATATTATTGGCACAGGCATTGCTGCATGGGCG
TTTGAATATATGCCAATTTTTGATGAAGAAACGCGTGATGCCTTCGTCAAAATCGGTATGGATGTCATGAAAAATACGCC
TACAGAAATGTTTGCCAATGCCATCATCTCCGGCTGGCTGATTGCCACCATGGTATGGATGTTTCCGGCAGCTGGCGCAG
CCAAAATAGTGGTCATTATTTTAATGACGTGGCTTATCGCGTTAGGTGATACCACGCATATTGTTGTAGGTTCAGTAGAG
ATTCTTTATCTGGTGTTTAATGGCACTTTGCACTGGAGTGATTTTATCTGGCCATTCGCCCTGCCAACACTTGCTGGCAA
TATATGTGGGGGAACATTTATTTTTGCTCTGATGAGTCACGCGCAAATTCGTAACGACATGAGTAACAAACGCAAAGAGG
AACTTCGCTTACAGGCAGAACGCGAAGATAAAAAACAACAAAATTCGGAAAAAGAGGCCTGA

Upstream 100 bases:

>100_bases
AACAAACGTTACCCTTTTTGCGATTTAGGAAAATCTCCCACTCTCTGGCAAATAAAAACCGCTACGCTTTAGCTATACGT
GCTAATTATGAGTAAAACGC

Downstream 100 bases:

>100_bases
GTGATGACTGTTTGAGCAGTCGGGCGGCCCTGCTCTTATCAGATAGTTTAAAAACCGTTATACTCGTGCCGCTTTGTCCC
CTTAGTTAAATGGATATAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDKLDSGKIDHHSDELEVESEEKASGKKIEVDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAK
GIFHVQLDGIPGSFLLENIGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTPGNFGLLMRLWSVVLLGNIIGTGIAAWA
FEYMPIFDEETRDAFVKIGMDVMKNTPTEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVE
ILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEELRLQAEREDKKQQNSEKEA

Sequences:

>Translated_313_residues
MDKLDSGKIDHHSDELEVESEEKASGKKIEVDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAK
GIFHVQLDGIPGSFLLENIGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTPGNFGLLMRLWSVVLLGNIIGTGIAAWA
FEYMPIFDEETRDAFVKIGMDVMKNTPTEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVE
ILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEELRLQAEREDKKQQNSEKEA
>Mature_313_residues
MDKLDSGKIDHHSDELEVESEEKASGKKIEVDEDRLPSRAMAIHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAK
GIFHVQLDGIPGSFLLENIGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTPGNFGLLMRLWSVVLLGNIIGTGIAAWA
FEYMPIFDEETRDAFVKIGMDVMKNTPTEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVE
ILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEELRLQAEREDKKQQNSEKEA

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=310, Percent_Identity=88.7096774193548, Blast_Score=550, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 34827; Mature: 34827

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLDSGKIDHHSDELEVESEEKASGKKIEVDEDRLPSRAMAIHEHIRQDGEKELERDAM
CCCCCCCCCCCCCCCCCCCCHHCCCCCEEECCHHHCCHHHHHHHHHHHHCHHHHHHHHHH
ALLWSAIAAGLSMGASLLAKGIFHVQLDGIPGSFLLENIGYTFGFIIVIMARQQLFTENT
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VTAVLPVMQKPTPGNFGLLMRLWSVVLLGNIIGTGIAAWAFEYMPIFDEETRDAFVKIGM
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DVMKNTPTEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHE
ILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEELRLQAE
EEEEEECCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REDKKQQNSEKEA
HHHHHHHCCCCCC
>Mature Secondary Structure
MDKLDSGKIDHHSDELEVESEEKASGKKIEVDEDRLPSRAMAIHEHIRQDGEKELERDAM
CCCCCCCCCCCCCCCCCCCCHHCCCCCEEECCHHHCCHHHHHHHHHHHHCHHHHHHHHHH
ALLWSAIAAGLSMGASLLAKGIFHVQLDGIPGSFLLENIGYTFGFIIVIMARQQLFTENT
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VTAVLPVMQKPTPGNFGLLMRLWSVVLLGNIIGTGIAAWAFEYMPIFDEETRDAFVKIGM
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DVMKNTPTEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHE
ILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMSHAQIRNDMSNKRKEELRLQAE
EEEEEECCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REDKKQQNSEKEA
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]