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The map label for this gene is ybbB [H]

Identifier: 218547956

GI number: 218547956

Start: 580595

End: 581689

Strand: Reverse

Name: ybbB [H]

Synonym: EFER_0559

Alternate gene names: 218547956

Gene position: 581689-580595 (Counterclockwise)

Preceding gene: 218547959

Following gene: 218547949

Centisome position: 12.68

GC content: 55.16

Gene sequence:

>1095_bases
ATGCAAGAGAGACACACGGAGCAGGACTATCGTGCCCTGCTGATTGCTGATACGCCCATTATTGATGTTCGCGCCCCTGT
CGAGTTTGAGCAAGGCGCAATGCCCGCCGCTATTAATCTGCCGTTAATGAATAATGATGAACGCGCCGCAGTTGGCACCT
GCTATAAACAGCAAGGCTCAGATGCAGCGCTGGCGCTGGGGCATAAACTGGTGGCGGGTGAAATTCGTCAGCAGCGCATG
GATGCCTGGCGGGCAGCGTGCCTGCAAAATCCGCAAGGTATTCTCTGCTGCGCCCGTGGCGGCCAACGTTCGCATATTGT
GCAACGCTGGCTGCATGAAGCGGGGATTGATTATCCGCTAGTGGAAGGCGGTTATAAGGCACTGCGCCAGACAGCGATTC
AGGCGACCATTGAACTGGCACAAAAACCGATAGTGCTGATTGGCGGTTGTACCGGCTGCGGTAAAACGCTGTTAGTGCAA
CAACAGCCGAACGGTGTTGATCTGGAAGGGCTGGCGCGTCATCGCGGTTCGGCGTTTGGTCGCACGTTGCAACCGCAACT
TAGCCAGGCGAGTTTTGAAAATCTGCTGGCTGCCGAAATGCTAAAAACCGACGCCCGTCAGGAGCTACGGCTGTGGGTGC
TGGAAGATGAAAGCCGGATGATCGGTTCGAATCACCTGCCGGAATGCCTGCGCGAGCGAATGACTCAGGCGGCGATTGCG
GTGGTAGAAGATCCGTTTGAGATCCGTCTTGAACGCCTGAACGAAGAGTATTTCTTGCGTATGCATCATGATTTTATCCA
TGCGTACGGCGACGAACAGGGCTGGCAGGAGTATTGCGAATACCTGCATCACGGACTTTCGGCGATTAAGCGTCGGCTGG
GGCTACAACGCTATAACGAACTGGCTACAAGGCTGGATGCGGCGCTGACAACGCAACTCGCAACCGGTAGCACCGACGGT
CATCTGGCCTGGCTGGTGCCGTTACTTGAAGAATATTACGACCCGATGTATCGCTATCAGCTTGAGAAAAAAGCGGAAAA
AGTTGTCTTTCGCGGTGAGTGGGCAGAAGTGGCGGAGTGGGTTAAGGCGCAGTGA

Upstream 100 bases:

>100_bases
TTTTAGATATTTTCGGCAACTCACACAGTTAAAAATCAAGTCACCTTGCGTATTGGGGCGTAAAATAGCGCGCAAGCTGA
TTTGAGGTTCACTTTTTACT

Downstream 100 bases:

>100_bases
TGAGCGGAATAATTCCTGCTTTATAAAGGTTGTTTAGCCGGATGTGTGATGTCACCATCCGGTTTAAGATTTTCTTTCTC
TTAAATCAAACAATTGCTGC

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MQERHTEQDYRALLIADTPIIDVRAPVEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRM
DAWRAACLQNPQGILCCARGGQRSHIVQRWLHEAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGCGKTLLVQ
QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQELRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFIHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNELATRLDAALTTQLATGSTDG
HLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEWVKAQ

Sequences:

>Translated_364_residues
MQERHTEQDYRALLIADTPIIDVRAPVEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRM
DAWRAACLQNPQGILCCARGGQRSHIVQRWLHEAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGCGKTLLVQ
QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQELRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFIHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNELATRLDAALTTQLATGSTDG
HLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEWVKAQ
>Mature_364_residues
MQERHTEQDYRALLIADTPIIDVRAPVEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRM
DAWRAACLQNPQGILCCARGGQRSHIVQRWLHEAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGCGKTLLVQ
QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQELRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFIHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNELATRLDAALTTQLATGSTDG
HLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEWVKAQ

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA [H]

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=364, Percent_Identity=97.2527472527473, Blast_Score=731, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR017582 [H]

Pfam domain/function: PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 41231; Mature: 41231

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQERHTEQDYRALLIADTPIIDVRAPVEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGS
CCCCCCCCHHEEEEEECCCEEEEECCCCCCCCCCCCEEECCEECCCCCHHHHHHHHHCCC
DAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQRWLHEAGIDYPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCC
VEGGYKALRQTAIQATIELAQKPIVLIGGCTGCGKTLLVQQQPNGVDLEGLARHRGSAFG
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCHHCC
RTLQPQLSQASFENLLAAEMLKTDARQELRLWVLEDESRMIGSNHLPECLRERMTQAAIA
CCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEECCCHHCCCCCCHHHHHHHHHHHHHH
VVEDPFEIRLERLNEEYFLRMHHDFIHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
HHCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LATRLDAALTTQLATGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHEEECCCHHHHHHH
VKAQ
HCCC
>Mature Secondary Structure
MQERHTEQDYRALLIADTPIIDVRAPVEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGS
CCCCCCCCHHEEEEEECCCEEEEECCCCCCCCCCCCEEECCEECCCCCHHHHHHHHHCCC
DAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQRSHIVQRWLHEAGIDYPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCC
VEGGYKALRQTAIQATIELAQKPIVLIGGCTGCGKTLLVQQQPNGVDLEGLARHRGSAFG
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHCCHHCC
RTLQPQLSQASFENLLAAEMLKTDARQELRLWVLEDESRMIGSNHLPECLRERMTQAAIA
CCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEECCCHHCCCCCCHHHHHHHHHHHHHH
VVEDPFEIRLERLNEEYFLRMHHDFIHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
HHCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LATRLDAALTTQLATGSTDGHLAWLVPLLEEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHEEECCCHHHHHHH
VKAQ
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA