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The map label for this gene is rhiR [H]

Identifier: 218532854

GI number: 218532854

Start: 5319310

End: 5320041

Strand: Reverse

Name: rhiR [H]

Synonym: Mchl_4977

Alternate gene names: 218532854

Gene position: 5320041-5319310 (Counterclockwise)

Preceding gene: 218532855

Following gene: 218532853

Centisome position: 92.08

GC content: 63.25

Gene sequence:

>732_bases
ATGTCTAGAAAATCACTTGACCTGACGTTGGAAATTCTGAAGTCGCTCGATCGAGCGCATTCGCGTGAGGATATTCTGCG
GGCCATCATGCCGCGGCTCAACGCGCTGGGCATCGAATACGTCATCTCGGCCATGATTCCTCTGAAACGCCTGCCAGCGC
GAACACAGAAGAATTACCTTATATTAGAGAATACTTCCGACGAGTGGAACCGGCTCTACTTTTCGAAAGGCTATATGTAT
ACGGACCCGGTCGTGCAGGCGACTCTGTCCAGCACGACCGGCTTCCGCTGGTCGGAGATCGAACCGGCGGGCGTGCTCGA
CCCCCGCTCGCGGCAGGTGATGAACGAGGCCGGCGAGTTCGGCCTCGGCGATGGCTTCACCGTGCCGCTCGCCACGCTGG
AGGAGGAGCGCGGCGGCCTCACCTTCGCCGGTCCGCGGCTCGACATCAGCCCGGGACAGCGCGGGATGCTCACCCTGCTC
GCCTCCTACGTGGTCGGGCAGACGCTGCTCATCGACAACGGCCCCAGCGAACGCCGGATGGGACTGACCCCGCGCGAGCG
CGAGAGCCTGCAATGGGTCGCCGAGGGCAAGACCGATTGGGAGATCGGCGAGTTGATGGGCATCTCGCGGCACGGCGTCG
ATTTCCACCTGCGCTCCGCCCGGGTGAAACTCGGCTGCGTGTCCCGTACGCAAGCGGTGGCCGAAGGGTTCAGGCGCGGC
CTGATCATCTGA

Upstream 100 bases:

>100_bases
GCAGGCCACAGTGAAGCAACTTCAACGAAATTTACGAGCGCCCTTCTCAAAGGCGTAGCAACGACTTATCGTGATGAGAG
TGCGATGATTTTGCCGGGCC

Downstream 100 bases:

>100_bases
GCGGACCAGACCGCGCCGCCATCGCCCCCCTGCCTCACATCGAAAGAGCCCCCTCGAGAGGGTGAGCCGCGGCGCGACCG
AAGCACCGCGCGCGGCGTGC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MSRKSLDLTLEILKSLDRAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNRLYFSKGYMY
TDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERGGLTFAGPRLDISPGQRGMLTLL
ASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG
LII

Sequences:

>Translated_243_residues
MSRKSLDLTLEILKSLDRAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNRLYFSKGYMY
TDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERGGLTFAGPRLDISPGQRGMLTLL
ASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG
LII
>Mature_242_residues
SRKSLDLTLEILKSLDRAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNRLYFSKGYMYT
DPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERGGLTFAGPRLDISPGQRGMLTLLA
SYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGL
II

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=236, Percent_Identity=25.4237288135593, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27195; Mature: 27063

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKSLDLTLEILKSLDRAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYL
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
ILENTSDEWNRLYFSKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEF
EEECCCCHHHEEEEECCEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
GLGDGFTVPLATLEEERGGLTFAGPRLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRM
CCCCCCEECHHHHHHHCCCEEEECCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCCC
GLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG
CCCCCHHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEECCEEEEEHHHHHHHHHHHHHCC
LII
CCC
>Mature Secondary Structure 
SRKSLDLTLEILKSLDRAHSREDILRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYL
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
ILENTSDEWNRLYFSKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEF
EEECCCCHHHEEEEECCEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
GLGDGFTVPLATLEEERGGLTFAGPRLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRM
CCCCCCEECHHHHHHHCCCEEEECCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCCC
GLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG
CCCCCHHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEECCEEEEEHHHHHHHHHHHHHCC
LII
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]