Click here to switch to the map view.

The map label for this gene is abrB [H]

Identifier: 218234814

GI number: 218234814

Start: 40736

End: 41020

Strand: Reverse

Name: abrB [H]

Synonym: BCB4264_A0042

Alternate gene names: 218234814

Gene position: 41020-40736 (Counterclockwise)

Preceding gene: 218235173

Following gene: 218231526

Centisome position: 0.76

GC content: 34.74

Gene sequence:

>285_bases
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Upstream 100 bases:

>100_bases
ATGATTGGTATCATATGTCCATAGGGTATTTTGTCGAAAAATGACGAATCTAAAAATAGACTCGAAACTTATAAACTATT
TATTTAGGAGGAAAAAAATT

Downstream 100 bases:

>100_bases
GCTTCTCAATTATGAGAAGCTTATTTTTTATCGACATGATAGATTTGATATACATCTCTTTTCGACAAATCTCGATCTTT
AGCGACTGTTTTAATCGCTT

Product: transition state transcriptional regulatory protein AbrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Sequences:

>Translated_94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK
>Mature_94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10490; Mature: 10490

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE
SDGNLSLAEGKIILSKEGAEQILNELQDYIETAK
CCCCEEEECCEEEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE
SDGNLSLAEGKIILSKEGAEQILNELQDYIETAK
CCCCEEEECCEEEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]