Click here to switch to the map view.

The map label for this gene is 218233874

Identifier: 218233874

GI number: 218233874

Start: 1003797

End: 1004327

Strand: Reverse

Name: 218233874

Synonym: BCB4264_A1023

Alternate gene names: NA

Gene position: 1004327-1003797 (Counterclockwise)

Preceding gene: 218234064

Following gene: 218235939

Centisome position: 18.53

GC content: 31.64

Gene sequence:

>531_bases
ATGTTAACCATAGAAAATGAAGAAAGTCATGCTTCTGATATGACCTTTGAAGATTTATTTAAGCAGTACTATGCTTACGC
TGTGAAACAAATCATCTGGATCGTTAAAGATCAATCTATCGCTGAAGAGTTAGCACAAGAAGTATTTTTACAATTATATC
GTAGTGATTGGAAAGGAATTGAAAACATACCTGGATGGTTGATTAAATCTTCTACTTATGTAGCCTATAACCATTTTCGA
TCTGAAAAAAGGCAGCAAGCGAAGATTGATAAAGAAATACAATACCATGAAGTACAAAATGTTTCATCATTAGACGATGA
TTGGATAAGAAAAGAAGAAATTACAAAGGTCCAAACGATACTAAATAAAATGAATGATCGAGAACGAACCCTTTTACTAA
TGAAATTCTCTGGTTTTCAATATAAAGAAATTGCAGAAGTACTTCAAATTGAAATATCTTCTATTGGAACATTATTGGTC
CGAGCCAAAATGAAATTTCGCAAGATTTATAAACAAATGGAGGAGGCATAA

Upstream 100 bases:

>100_bases
TAGTACATAATAAAAAATATCCAGAAAAACTGTCACAAAATCCGTTTTTCTGGTTTCTCTATAATACAGGTATCAAATTG
AAAGTGAGGTTTAAACGAAC

Downstream 100 bases:

>100_bases
CAAATGAAATGTTATGATATCGGGTTTATTCAAACATATATTGATGGAGAACTTTCTCATGATATAAGAAAGGAATTCAC
AAAACACCTAGATACATGTG

Product: RNA polymerase sigma factor SigX

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor SigX; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MLTIENEESHASDMTFEDLFKQYYAYAVKQIIWIVKDQSIAEELAQEVFLQLYRSDWKGIENIPGWLIKSSTYVAYNHFR
SEKRQQAKIDKEIQYHEVQNVSSLDDDWIRKEEITKVQTILNKMNDRERTLLLMKFSGFQYKEIAEVLQIEISSIGTLLV
RAKMKFRKIYKQMEEA

Sequences:

>Translated_176_residues
MLTIENEESHASDMTFEDLFKQYYAYAVKQIIWIVKDQSIAEELAQEVFLQLYRSDWKGIENIPGWLIKSSTYVAYNHFR
SEKRQQAKIDKEIQYHEVQNVSSLDDDWIRKEEITKVQTILNKMNDRERTLLLMKFSGFQYKEIAEVLQIEISSIGTLLV
RAKMKFRKIYKQMEEA
>Mature_176_residues
MLTIENEESHASDMTFEDLFKQYYAYAVKQIIWIVKDQSIAEELAQEVFLQLYRSDWKGIENIPGWLIKSSTYVAYNHFR
SEKRQQAKIDKEIQYHEVQNVSSLDDDWIRKEEITKVQTILNKMNDRERTLLLMKFSGFQYKEIAEVLQIEISSIGTLLV
RAKMKFRKIYKQMEEA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21030; Mature: 21030

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIENEESHASDMTFEDLFKQYYAYAVKQIIWIVKDQSIAEELAQEVFLQLYRSDWKGI
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
ENIPGWLIKSSTYVAYNHFRSEKRQQAKIDKEIQYHEVQNVSSLDDDWIRKEEITKVQTI
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LNKMNDRERTLLLMKFSGFQYKEIAEVLQIEISSIGTLLVRAKMKFRKIYKQMEEA
HHHHCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTIENEESHASDMTFEDLFKQYYAYAVKQIIWIVKDQSIAEELAQEVFLQLYRSDWKGI
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
ENIPGWLIKSSTYVAYNHFRSEKRQQAKIDKEIQYHEVQNVSSLDDDWIRKEEITKVQTI
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LNKMNDRERTLLLMKFSGFQYKEIAEVLQIEISSIGTLLVRAKMKFRKIYKQMEEA
HHHHCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA