Click here to switch to the map view.

The map label for this gene is yddQ [H]

Identifier: 218233842

GI number: 218233842

Start: 333110

End: 333655

Strand: Reverse

Name: yddQ [H]

Synonym: BCB4264_A0356

Alternate gene names: 218233842

Gene position: 333655-333110 (Counterclockwise)

Preceding gene: 218235877

Following gene: 218233944

Centisome position: 6.16

GC content: 34.8

Gene sequence:

>546_bases
ATGAAAACAGCTCTTTTACTCATCGATATTCAAAACGATTATTTTCCAAATGGAAAGATGGAATTGCGTAATCCAGTAGA
AGCAAGCGAATATGCTAATCAGTTATTACAACACTTTAGAACAAACAGCGAACCTATTTTTCATATCCAACACGTAGCTA
TAAAAGATGACGCTACTTTTTTCCTACCTAATACAGAAGGTGTACATATTCACGAAAGCGTACGTCCACTTAGAGAAGAA
ACAGTTATAGTCAAACATTATCCAAATAGCTTCCGAGAAACTAATCTTCTAGAGCAATTAAAACGTTTAAATATTGAACA
TGTCGTTGTATGCGGGATGATGACTCATATGTGTATCGATGCTACAGTAAGGGCTGCATTCGATTTTGGCTTTCAATGTA
CCGTTATACATGATGCTTGTGCTACAAAAGACCTGTCTTTTAAGAACGCTACTATACCAGCTGTTTACATTCACAATACA
ATTTTAGCTAGTTTAAATGGCGTATATGCAAATGTAATAAGCACGCAAGAATTTTTAGCTACATAA

Upstream 100 bases:

>100_bases
GTTATTTAAAATTCTTCTTCCTCATATTTTTAAACAGGAGAATCTTCTCTACGAATTGAATAAATTTATTTGAATATGAA
ACTCGGAGGAAGATAAATAT

Downstream 100 bases:

>100_bases
AAAAACACTCCTTTCAGTGAGCAAAACCGAAAGGAGTGTTCCTTGTCGAACCATAGATTTTCTTTCAAATTGTATTATAC
AGGAAATTCTCAAAATGAAT

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MKTALLLIDIQNDYFPNGKMELRNPVEASEYANQLLQHFRTNSEPIFHIQHVAIKDDATFFLPNTEGVHIHESVRPLREE
TVIVKHYPNSFRETNLLEQLKRLNIEHVVVCGMMTHMCIDATVRAAFDFGFQCTVIHDACATKDLSFKNATIPAVYIHNT
ILASLNGVYANVISTQEFLAT

Sequences:

>Translated_181_residues
MKTALLLIDIQNDYFPNGKMELRNPVEASEYANQLLQHFRTNSEPIFHIQHVAIKDDATFFLPNTEGVHIHESVRPLREE
TVIVKHYPNSFRETNLLEQLKRLNIEHVVVCGMMTHMCIDATVRAAFDFGFQCTVIHDACATKDLSFKNATIPAVYIHNT
ILASLNGVYANVISTQEFLAT
>Mature_181_residues
MKTALLLIDIQNDYFPNGKMELRNPVEASEYANQLLQHFRTNSEPIFHIQHVAIKDDATFFLPNTEGVHIHESVRPLREE
TVIVKHYPNSFRETNLLEQLKRLNIEHVVVCGMMTHMCIDATVRAAFDFGFQCTVIHDACATKDLSFKNATIPAVYIHNT
ILASLNGVYANVISTQEFLAT

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20573; Mature: 20573

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALLLIDIQNDYFPNGKMELRNPVEASEYANQLLQHFRTNSEPIFHIQHVAIKDDATF
CCEEEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEE
FLPNTEGVHIHESVRPLREETVIVKHYPNSFRETNLLEQLKRLNIEHVVVCGMMTHMCID
EECCCCCEEEHHHHCCHHHCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ATVRAAFDFGFQCTVIHDACATKDLSFKNATIPAVYIHNTILASLNGVYANVISTQEFLA
HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHC
T
C
>Mature Secondary Structure
MKTALLLIDIQNDYFPNGKMELRNPVEASEYANQLLQHFRTNSEPIFHIQHVAIKDDATF
CCEEEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCEE
FLPNTEGVHIHESVRPLREETVIVKHYPNSFRETNLLEQLKRLNIEHVVVCGMMTHMCID
EECCCCCEEEHHHHCCHHHCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
ATVRAAFDFGFQCTVIHDACATKDLSFKNATIPAVYIHNTILASLNGVYANVISTQEFLA
HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]