Definition Chlorobium tepidum TLS, complete genome.
Accession NC_002932
Length 2,154,946

Click here to switch to the map view.

The map label for this gene is yfhP [C]

Identifier: 21674519

GI number: 21674519

Start: 1612574

End: 1613032

Strand: Reverse

Name: yfhP [C]

Synonym: CT1702

Alternate gene names: 21674519

Gene position: 1613032-1612574 (Counterclockwise)

Preceding gene: 21674520

Following gene: 21674518

Centisome position: 74.85

GC content: 54.25

Gene sequence:

>459_bases
ATGAAGGTACTCAACAAAGAAACAGACTACGCCGTCCGGGCACTGATCTCTCTCGGGATGAAATCCGATGGATGGGTTTC
GGCGAAGGTGATCTCCGACGAACAGGCGATTCCCTACCAGTTCCTGCGGCGCATCTTGCAGGAGCTGATCCGCAACGGGC
TGGTGGAGTCGAAAGAGGGCGCTGGCGGCGGCGTGAAGCTCGCAAAAGAGCCTGGTGACATCGGTGTGGCCGATGTGATC
GAAATCTTTCAGGGCAAGGTGCAGCTTTCGGAGTGCATGTTCCGCAAGCAGCTCTGCTCGAATCGTGCCAACTGTGTCTT
GCGCCATGAGATCATGCGCATCGAAAAAATGGTGAATAACGAGTTCTCGCAAGTGACCATTGGCAAGCTGATCGACGATC
TGAAGGCGGTGGAAGCGATGAATAAAACCAGACAGACAGAACAACAGGAAGCACGATGA

Upstream 100 bases:

>100_bases
AGCGGATTTTTTTGCGAAAACAAAATCAACCGGGAATTTTTGCAATTCTATTGGTATTTTGATAAACTGATACTAAATTA
GTATCAGAAATTCAGCGATT

Downstream 100 bases:

>100_bases
AACGGCAGATCATAACCATAGATGAGAAAAAATGCACCGGCTGCGGCGATTGCATTCCGGCGTGCCCGGAAGGGGCGCTT
CAGGTGATCGACGGCAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MKVLNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEGAGGGVKLAKEPGDIGVADVI
EIFQGKVQLSECMFRKQLCSNRANCVLRHEIMRIEKMVNNEFSQVTIGKLIDDLKAVEAMNKTRQTEQQEAR

Sequences:

>Translated_152_residues
MKVLNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEGAGGGVKLAKEPGDIGVADVI
EIFQGKVQLSECMFRKQLCSNRANCVLRHEIMRIEKMVNNEFSQVTIGKLIDDLKAVEAMNKTRQTEQQEAR
>Mature_152_residues
MKVLNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEGAGGGVKLAKEPGDIGVADVI
EIFQGKVQLSECMFRKQLCSNRANCVLRHEIMRIEKMVNNEFSQVTIGKLIDDLKAVEAMNKTRQTEQQEAR

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 17097; Mature: 17097

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEG
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC
AGGGVKLAKEPGDIGVADVIEIFQGKVQLSECMFRKQLCSNRANCVLRHEIMRIEKMVNN
CCCCCEECCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
EFSQVTIGKLIDDLKAVEAMNKTRQTEQQEAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVLNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEG
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCC
AGGGVKLAKEPGDIGVADVIEIFQGKVQLSECMFRKQLCSNRANCVLRHEIMRIEKMVNN
CCCCCEECCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
EFSQVTIGKLIDDLKAVEAMNKTRQTEQQEAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]