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The map label for this gene is ycf5 [H]

Identifier: 21674377

GI number: 21674377

Start: 1471081

End: 1471884

Strand: Reverse

Name: ycf5 [H]

Synonym: CT1559

Alternate gene names: 21674377

Gene position: 1471884-1471081 (Counterclockwise)

Preceding gene: 21674378

Following gene: 21674373

Centisome position: 68.3

GC content: 58.46

Gene sequence:

>804_bases
ATGACCCTGGTAGAATTTCCGGCAATAACCTTCGCGGCGGTTGTGTGCTGGGCGGTAGGGAGCCTCTTGCAGATTCCGGC
GAAAAACTCCAAAGTGTCAGGCCCTCTCTCCTGGCTTTTCCTGTTCTCAGGAACGTTGGTTCTCGTATGGTTTCTTGCCT
CTTACTGGATAGCTCTCGATCGCCCGCCCCTTCGCACGCTCGGTGAAACGAGGCTCTGGTATGCGACGCTCATTCCCGTT
GTCGGTTTCCTGGTCGAGTACCGCTACAAGATTGGCTGGCTCAAGTACTACTGCATGGGGTTGGCAACGGTGTTTCTCGG
TATCAACTACATGCACCCCGACGTCTTCGAGAAGGCCCTTATGCCTGCGTTGCAGAGCCCGTGGTTCGTGCCGCACGTGG
TGGTGTATCTGGTAGGCTATGTGCTGCTGGCGGCCTCGGCGGTCTCCGGCTGGCACAACGTTTTTCTCAACTTCCGTGGC
AAGCGTTCTGCAAAGGGGGAGTCGATGGCTCATTATCTCGCCCTGCTTGGATTTGTGTTGCTCACCTTCGGGCTGATTTT
CGGCGCACTCTGGGCCAAGGAGGCGTGGGGGCACTACTGGACCTGGGATCCGAAGGAGACGTGGGCTTTCATTTCGTGGC
TGGCGTACCTTGGCTACCTGCACTTGGTGGCCTGCAAGACCGACCCGCGCAAGCTCCAGTGGTACCTCGGGCTAGCGTTT
TTCGTGCTGCTGGTCTGCTGGTTCGGCGTGAACTACCTCCCCTCGGCGCAGAACAGCGTGCACACCTACTCGGGCGCAAG
CTGA

Upstream 100 bases:

>100_bases
TCAGGGACCCTTGGCTGCCGGCGGTCTATCTTGGATTCTTCATGATTATGGCTGGCAACGTTTTGTATTTCTGGAAAGGC
TTTAAAAAGATGGAGGAGGC

Downstream 100 bases:

>100_bases
GGCGGGGAATAGCAAAGGACTTAAAGGACATTAGGGACTGAAGGGGCAATGAGGATTTTCTGATCTTCTTTGTCCCTTTT
GTCGTTTTCGTACTTGAAAG

Product: cytochrome c biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTLVEFPAITFAAVVCWAVGSLLQIPAKNSKVSGPLSWLFLFSGTLVLVWFLASYWIALDRPPLRTLGETRLWYATLIPV
VGFLVEYRYKIGWLKYYCMGLATVFLGINYMHPDVFEKALMPALQSPWFVPHVVVYLVGYVLLAASAVSGWHNVFLNFRG
KRSAKGESMAHYLALLGFVLLTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVACKTDPRKLQWYLGLAF
FVLLVCWFGVNYLPSAQNSVHTYSGAS

Sequences:

>Translated_267_residues
MTLVEFPAITFAAVVCWAVGSLLQIPAKNSKVSGPLSWLFLFSGTLVLVWFLASYWIALDRPPLRTLGETRLWYATLIPV
VGFLVEYRYKIGWLKYYCMGLATVFLGINYMHPDVFEKALMPALQSPWFVPHVVVYLVGYVLLAASAVSGWHNVFLNFRG
KRSAKGESMAHYLALLGFVLLTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVACKTDPRKLQWYLGLAF
FVLLVCWFGVNYLPSAQNSVHTYSGAS
>Mature_266_residues
TLVEFPAITFAAVVCWAVGSLLQIPAKNSKVSGPLSWLFLFSGTLVLVWFLASYWIALDRPPLRTLGETRLWYATLIPVV
GFLVEYRYKIGWLKYYCMGLATVFLGINYMHPDVFEKALMPALQSPWFVPHVVVYLVGYVLLAASAVSGWHNVFLNFRGK
RSAKGESMAHYLALLGFVLLTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVACKTDPRKLQWYLGLAFF
VLLVCWFGVNYLPSAQNSVHTYSGAS

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30331; Mature: 30200

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLVEFPAITFAAVVCWAVGSLLQIPAKNSKVSGPLSWLFLFSGTLVLVWFLASYWIALD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
RPPLRTLGETRLWYATLIPVVGFLVEYRYKIGWLKYYCMGLATVFLGINYMHPDVFEKAL
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
MPALQSPWFVPHVVVYLVGYVLLAASAVSGWHNVFLNFRGKRSAKGESMAHYLALLGFVL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LTFGLIFGALWAKEAWGHYWTWDPKETWAFISWLAYLGYLHLVACKTDPRKLQWYLGLAF
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
FVLLVCWFGVNYLPSAQNSVHTYSGAS
HHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA