Definition | Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome. |
---|---|
Accession | NC_004061 |
Length | 641,454 |
Click here to switch to the map view.
The map label for this gene is bcp
Identifier: 21672381
GI number: 21672381
Start: 101886
End: 102362
Strand: Direct
Name: bcp
Synonym: BUsg089
Alternate gene names: 21672381
Gene position: 101886-102362 (Clockwise)
Preceding gene: 30410814
Following gene: 21672383
Centisome position: 15.88
GC content: 24.32
Gene sequence:
>477_bases ATGACTACACTAAAACCTGGAGATATTGCTCCAAAATTTATTCTTCCTAATTGTATTGATAAATCAATAAAACTATCTGA TTTTTTAGGTAAGAAAGTACTAGTGTATTTTTATCCAAAAGCTATGACTCCCGGCTGTACAGTACAAGCATGTAATATCA GAGATAATTTAGAATTATTTAAAAGTAAGAAGGTGGAAGTTTTAGGTATTAGTCCTGATAATACGAATAAGTTATTAACT TTTGTTGAAAAAAAAATGTTAAATTTTACTTTATTATCTGATAAACAAAACATTGTTAGCAAAAAATTCGGTGTGTGGGG TGAAAAAATTTTTATGGGAAAAAAATATTTTGGAATCTATCGTACTAGTTTTTTAATTAACTCATCTGGTTTTATAGATA AAATATTTTTTAAATTTAAGTGTAAAGATCATCATAAAATTATATTAACATATTTAAATTCAAAAAAAAGTGATTGA
Upstream 100 bases:
>100_bases TTTAAAAATTTAATCTATTTTTATTTTGAAAATCAATTTAATTCATAACATTTTTTATTAAAAAATAATATTTTTATATT ATTAAGGAATATATCATATA
Downstream 100 bases:
>100_bases TTCTTAGTGAATAAATATAATGTTATTAAGTTTTTATATTCCTCTAAGCTACTAAATAATAAATTTAGTAGCAAAAATAT TTAATTTTTTTTAATTATAA
Product: thioredoxin-dependent thiol peroxidase
Products: NA
Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MTTLKPGDIAPKFILPNCIDKSIKLSDFLGKKVLVYFYPKAMTPGCTVQACNIRDNLELFKSKKVEVLGISPDNTNKLLT FVEKKMLNFTLLSDKQNIVSKKFGVWGEKIFMGKKYFGIYRTSFLINSSGFIDKIFFKFKCKDHHKIILTYLNSKKSD
Sequences:
>Translated_158_residues MTTLKPGDIAPKFILPNCIDKSIKLSDFLGKKVLVYFYPKAMTPGCTVQACNIRDNLELFKSKKVEVLGISPDNTNKLLT FVEKKMLNFTLLSDKQNIVSKKFGVWGEKIFMGKKYFGIYRTSFLINSSGFIDKIFFKFKCKDHHKIILTYLNSKKSD >Mature_157_residues TTLKPGDIAPKFILPNCIDKSIKLSDFLGKKVLVYFYPKAMTPGCTVQACNIRDNLELFKSKKVEVLGISPDNTNKLLTF VEKKMLNFTLLSDKQNIVSKKFGVWGEKIFMGKKYFGIYRTSFLINSSGFIDKIFFKFKCKDHHKIILTYLNSKKSD
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain
Homologues:
Organism=Escherichia coli, GI1788825, Length=152, Percent_Identity=57.8947368421053, Blast_Score=191, Evalue=3e-50,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): BCP_BUCAP (Q9ZHF0)
Other databases:
- EMBL: AE013218 - EMBL: AF067228 - RefSeq: NP_660448.1 - ProteinModelPortal: Q9ZHF0 - EnsemblBacteria: EBBUCT00000000364 - GeneID: 1005906 - GenomeReviews: AE013218_GR - KEGG: bas:BUsg089 - HOGENOM: HBG493509 - OMA: GANMARE - ProtClustDB: PRK09437 - BioCyc: BAPH198804:BUSG089-MONOMER - InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 - Gene3D: G3DSA:3.40.30.10
Pfam domain/function: PF00578 AhpC-TSA; SSF52833 Thiordxn-like_fd
EC number: =1.11.1.15
Molecular weight: Translated: 18138; Mature: 18007
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: PS51352 THIOREDOXIN_2
Important sites: ACT_SITE 46-46
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLKPGDIAPKFILPNCIDKSIKLSDFLGKKVLVYFYPKAMTPGCTVQACNIRDNLELF CCCCCCCCCCCCEECCCCCCCCEEHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCHHHH KSKKVEVLGISPDNTNKLLTFVEKKMLNFTLLSDKQNIVSKKFGVWGEKIFMGKKYFGIY HCCCEEEEEECCCCCHHHHHHHHHHHHEEEEECCCHHHHHHHCCCCCCEEEECCHHHEEE RTSFLINSSGFIDKIFFKFKCKDHHKIILTYLNSKKSD EEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCC >Mature Secondary Structure TTLKPGDIAPKFILPNCIDKSIKLSDFLGKKVLVYFYPKAMTPGCTVQACNIRDNLELF CCCCCCCCCCCEECCCCCCCCEEHHHHCCCEEEEEEECCCCCCCCEEEECCCCCCHHHH KSKKVEVLGISPDNTNKLLTFVEKKMLNFTLLSDKQNIVSKKFGVWGEKIFMGKKYFGIY HCCCEEEEEECCCCCHHHHHHHHHHHHEEEEECCCHHHHHHHCCCCCCEEEECCHHHEEE RTSFLINSSGFIDKIFFKFKCKDHHKIILTYLNSKKSD EEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12089438; 9767718