Click here to switch to the map view.

The map label for this gene is clpC [H]

Identifier: 213691598

GI number: 213691598

Start: 804842

End: 807427

Strand: Direct

Name: clpC [H]

Synonym: Blon_0702

Alternate gene names: 213691598

Gene position: 804842-807427 (Clockwise)

Preceding gene: 213691596

Following gene: 213691599

Centisome position: 28.41

GC content: 62.99

Gene sequence:

>2586_bases
ATGTTCGAACGGTTTACCGACCGTGCACGGCGCGTGATCGTGTTGGCGCAGGAAGAGGCGAGGGCCCTTCAGCACAACTA
CATTGGCACCGAACACCTGCTGCTCGGCCTGATCCGCGAAGGTGAGGGCGTGGCCGCCAAGGCGCTCGCCTCGAAGGGCG
TGGAGCTGGATGCCACCCGCAAGCAGGTCGAAGAGATGATCGGCAAGGGCAACGCGGCGCCGAACGGGCACATCCCCTTT
ACCCCGCACGCCAAGCAGGTGCTGGAGTTTTCGCTGCGTGAAGCCCTGCAGCTGGGCCACAGCTACATCGGCACCGAGCA
CATCCTGCTCGGATTGATCCGCGAAGGTGAGGGCGTGGGCACCCAGGTGCTCATCAAGATGGACGTCGATCTGGGCGAAT
TGCGCAGCGCGACCATCGATATGATCCGCGGCAACTCCGGCACTGGCGACGGCAAGGGCGAACTGGCCAATGCCGGCGGC
GTGGCGGACAAGCAGAACAAGTCCGGTTCCGCCATCCTCGACCAATTCGGACGCAACCTGACCGCCGAAGCCGCCGAAGG
CAAGCTGGACCCGGTCATCGGCCGTACCAACGAGATCGAACGCGTCATGGTCGTGCTTTCCCGACGCACCAAGAACAATC
CGGTGCTGATCGGCGAACCGGGAGTGGGCAAGACCGCCGTGGTCGAAGGCTTGGCCCAGAAAATCCAAGCCGGCGACGTG
CCGGAAACCCTGAAGGGCAAGCAGGTCTACTCGCTGGACCTCGGTTCCATGGTGGCCGGCTCCCGCTACCGTGGTGATTT
CGAGGAGCGCCTGAAGAAGGTGCTGAAGGAGATCAAGACCCGCGGCGACATCGTGCTGTTCATCGACGAGATTCACACCA
TCGTGGGCGCCGGCTCGGCCGACGGCGCGCTGGGTGCCTCCGACATGTTGAAGCCGATGCTGGCCCGTGGCGAGCTCCAG
ACCATCGGTGCCACTACCACCGACGAGTACCGCAAGTACATCGAGAAGGACGCGGCTCTGGAACGTCGATTCCAGCCGAT
TCAGGTGCACGAGCCGACCATCGCCGAGACCATCGAGATCCTGAAGGGCCTGCGTTCCCGTTACGAGAACCACCACCACG
TGACCATCACCGATGGCGCGCTGCAGTCCGCCGCAGAGCTGTCCAGCCGGTACATCCAGGACCGTAACCTGCCTGACAAG
GCCATCGACCTGATCGATGAGGCCGGTGCACGCCTGCGCATCAAGCGCCTGACCGCCCCGCCTGAGCTCAAGGAACTCGA
CGAGAAGATCGCCAAGATCGCCGCCGACAAGGACGAGGCCATCAAGGGCCAGGACTTCGAGAAGGCCGCCGAACTGCGCG
ACAAGCAGGAGAAGCTGGAAGCCGATCGCAAGCAGAAGGAAGACTCCTGGCGCGAAGGCGAGTCCGACGTCAAGATGGTT
GTGGACGAGGACGTGATCGCCGAGGTCATCAGTTCCACCACCGGTATCCCGGTGTTCAAGCTGACCCAGGCCGAGTCCAA
GAAACTGCTCAGCATGGAGACGGAGCTGCACAAGCGCATCATCGGTCAGGATGAAGCGGTTTCCGCTTTGTCACGGTCCA
TCCGACGCACCCGCGTGGGATTGAAGGACCCGAAGCGCCCGTCCGGCTCGTTCATCTTCGCCGGCCCCACCGGCGTCGGC
AAGACCGAGCTGGCCAAGACGCTCGCCGAGTTCCTGTTCGACGATGAGGACGCGCTGATTCGCGTGGACATGTCCGAGTT
CTCCGAGAAGTACGCGGCTTCGCGACTCTTCGGCGCGCCTCCGGGATACGTCGGCTACGAGGAGGGCGGCGAGCTCACCG
AAAAGGTGCGCCGCAAGCCGTTCTCCGTGGTGCTGTTCGACGAGATCGAAAAGGCTCATCCGGACATCTTCAACACGCTG
CTGCAGGTGCTCGATGACGGCCACCTGACCGACGGTCAGGGCCGCAAGGTGGACTTCAAGAACACCATCATCATCCTGAC
CACCAACCTCGGTACGCGAGACATCGCCAAGGCCGCCAACACGGGCTTCAACCTGGGTGCCAACAACGAGTCCAGCTACC
AGCGCATGAAGGACCAGGTCAGCTCCGAATTGAAGCAGCAGTTCCGCCCGGAGTTCCTGAACCGTCTGGACGACATCATC
GTCTTCAAGCAGCTCACCGAGCCGCAGGTGCGCCAGATCGTGGATCTGGATGTCAAGCAGCTCAACGACCGCCTGTTCGA
CCGTCATATGTCGCTCGAACTCACCGACGCCGCCAAGGACCTGCTCGCGCAGAAGGGCTTCGACCCGCTGCTCGGTGCCC
GTCCGCTGCGCCGCGTGATTCAGCGTGACATTGAGGACGCCATCTCCGAGAAGATCCTGATGGGAGATCTCGAGGACGGT
CAGCGCGTGATGGTGGATGCGGAAGGCGAGGGTATCCTTGGCGAATTCACCTTCAAGGGTGAGAAGTTCGAGGAGCCGGC
CGTCGCCGATAAGCCCGCCGAAGCCGGTGCCGCCAACGATGCCGAAACTTCGTCCGAAGCCGCACCCGTGCACGCTGACG
ATTCTGGCGACGCTGCGCAGGAGTAG

Upstream 100 bases:

>100_bases
GTTTTCTTATCCTCTTACGGCGCAATTCATGGAATCCGATGAATAAACGTCATCGTGAATCGGTAGAGTAAGACGGAATG
TCAATTGAGGAAGGACAAGC

Downstream 100 bases:

>100_bases
CGCATATAAGTAGTTGCGGAGCTCCCCTGTCAAGGGGAGCTGCTGTTTGTGTCGGATTATTGCAGCAGGGCGAGTCCGGT
GTCGATGGTCTCCTCGCGGG

Product: ATPase AAA-2 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 861; Mature: 861

Protein sequence:

>861_residues
MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATRKQVEEMIGKGNAAPNGHIPF
TPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGTGDGKGELANAGG
VADKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAGDV
PETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGELQ
TIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLPDK
AIDLIDEAGARLRIKRLTAPPELKELDEKIAKIAADKDEAIKGQDFEKAAELRDKQEKLEADRKQKEDSWREGESDVKMV
VDEDVIAEVISSTTGIPVFKLTQAESKKLLSMETELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTGVG
KTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNTL
LQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKAANTGFNLGANNESSYQRMKDQVSSELKQQFRPEFLNRLDDII
VFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGDLEDG
QRVMVDAEGEGILGEFTFKGEKFEEPAVADKPAEAGAANDAETSSEAAPVHADDSGDAAQE

Sequences:

>Translated_861_residues
MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATRKQVEEMIGKGNAAPNGHIPF
TPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGTGDGKGELANAGG
VADKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAGDV
PETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGELQ
TIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLPDK
AIDLIDEAGARLRIKRLTAPPELKELDEKIAKIAADKDEAIKGQDFEKAAELRDKQEKLEADRKQKEDSWREGESDVKMV
VDEDVIAEVISSTTGIPVFKLTQAESKKLLSMETELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTGVG
KTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNTL
LQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKAANTGFNLGANNESSYQRMKDQVSSELKQQFRPEFLNRLDDII
VFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGDLEDG
QRVMVDAEGEGILGEFTFKGEKFEEPAVADKPAEAGAANDAETSSEAAPVHADDSGDAAQE
>Mature_861_residues
MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATRKQVEEMIGKGNAAPNGHIPF
TPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGTGDGKGELANAGG
VADKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAGDV
PETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGELQ
TIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLPDK
AIDLIDEAGARLRIKRLTAPPELKELDEKIAKIAADKDEAIKGQDFEKAAELRDKQEKLEADRKQKEDSWREGESDVKMV
VDEDVIAEVISSTTGIPVFKLTQAESKKLLSMETELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTGVG
KTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNTL
LQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKAANTGFNLGANNESSYQRMKDQVSSELKQQFRPEFLNRLDDII
VFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGDLEDG
QRVMVDAEGEGILGEFTFKGEKFEEPAVADKPAEAGAANDAETSSEAAPVHADDSGDAAQE

Specific function: Part Of A Stress-Induced Multi-Chaperone System, It Is Involved In The Recovery Of The Cell From Heat-Induced Damage, In Cooperation With Dnak, Dnaj And Grpe. Acts Before Dnak, In The Processing Of Protein Aggregates. Protein Binding Stimulates The Atpase

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 UVR domain [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=301, Percent_Identity=35.2159468438538, Blast_Score=188, Evalue=2e-47,
Organism=Escherichia coli, GI1788943, Length=880, Percent_Identity=43.5227272727273, Blast_Score=674, Evalue=0.0,
Organism=Escherichia coli, GI1787109, Length=463, Percent_Identity=37.3650107991361, Blast_Score=293, Evalue=2e-80,
Organism=Saccharomyces cerevisiae, GI6320464, Length=696, Percent_Identity=48.132183908046, Blast_Score=625, Evalue=1e-180,
Organism=Saccharomyces cerevisiae, GI6323002, Length=881, Percent_Identity=38.7060158910329, Blast_Score=560, Evalue=1e-160,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR004176
- InterPro:   IPR023150
- InterPro:   IPR001943 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]

EC number: NA

Molecular weight: Translated: 94691; Mature: 94691

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS50151 UVR ; PS00871 CLPAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR
CCCHHHHHCCEEEEEECHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHH
KQVEEMIGKGNAAPNGHIPFTPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVG
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC
TQVLIKMDVDLGELRSATIDMIRGNSGTGDGKGELANAGGVADKQNKSGSAILDQFGRNL
EEEEEEECCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
TAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAGDV
CCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
PETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSA
CCHHCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCC
DGALGASDMLKPMLARGELQTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEI
CCCCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLPDKAIDLIDEAGARLRIKRLTAP
HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCC
PELKELDEKIAKIAADKDEAIKGQDFEKAAELRDKQEKLEADRKQKEDSWREGESDVKMV
CCHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VDEDVIAEVISSTTGIPVFKLTQAESKKLLSMETELHKRIIGQDEAVSALSRSIRRTRVG
ECHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
LKDPKRPSGSFIFAGPTGVGKTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAP
CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCC
PGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNTLLQVLDDGHLTDGQGRKVDFK
CCCCCCCCCCHHHHHHHHCCCEEEEHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEECC
NTIIILTTNLGTRDIAKAANTGFNLGANNESSYQRMKDQVSSELKQQFRPEFLNRLDDII
CEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCCCCHHCCCHHHHHHH
QRDIEDAISEKILMGDLEDGQRVMVDAEGEGILGEFTFKGEKFEEPAVADKPAEAGAAND
HHHHHHHHHHHHEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
AETSSEAAPVHADDSGDAAQE
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFERFTDRARRVIVLAQEEARALQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATR
CCCHHHHHCCEEEEEECHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHH
KQVEEMIGKGNAAPNGHIPFTPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVG
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC
TQVLIKMDVDLGELRSATIDMIRGNSGTGDGKGELANAGGVADKQNKSGSAILDQFGRNL
EEEEEEECCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
TAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAGDV
CCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
PETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSA
CCHHCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCC
DGALGASDMLKPMLARGELQTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEI
CCCCCHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLPDKAIDLIDEAGARLRIKRLTAP
HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCC
PELKELDEKIAKIAADKDEAIKGQDFEKAAELRDKQEKLEADRKQKEDSWREGESDVKMV
CCHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VDEDVIAEVISSTTGIPVFKLTQAESKKLLSMETELHKRIIGQDEAVSALSRSIRRTRVG
ECHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
LKDPKRPSGSFIFAGPTGVGKTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAP
CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCC
PGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNTLLQVLDDGHLTDGQGRKVDFK
CCCCCCCCCCHHHHHHHHCCCEEEEHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEECC
NTIIILTTNLGTRDIAKAANTGFNLGANNESSYQRMKDQVSSELKQQFRPEFLNRLDDII
CEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
VFKQLTEPQVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCCCCHHCCCHHHHHHH
QRDIEDAISEKILMGDLEDGQRVMVDAEGEGILGEFTFKGEKFEEPAVADKPAEAGAAND
HHHHHHHHHHHHEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
AETSSEAAPVHADDSGDAAQE
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]