Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
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Accession | NC_011593 |
Length | 2,832,748 |
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The map label for this gene is yhjX [H]
Identifier: 213690961
GI number: 213690961
Start: 39188
End: 40474
Strand: Reverse
Name: yhjX [H]
Synonym: Blon_0037
Alternate gene names: 213690961
Gene position: 40474-39188 (Counterclockwise)
Preceding gene: 213690962
Following gene: 213690958
Centisome position: 1.43
GC content: 60.53
Gene sequence:
>1287_bases ATGGCAAGGTTTACCGAGAATCGTTGGACCAGCGCGATTATTCCCGCACTGCTGATTCATATCCCAATCGGTACCGTCTA TTGCTGGAGCGTGTTCAAGCAGCTTATCGCTGACCGTCTCCACGCCAGCCCCGCCTCCGTGGAATGGGGCTTCTCACTCG CCATCTTCTTCCTCGGCATGTCCGCCGCGTTTGCCGGGCCAATGGTGGAGAAAAACATCAAGAAATCCGCACTCGTCTCC ATGGTCTGCTTCGTGGTCGGCTTCGCCGGCACGGGCGTGAGCATCGCCCTGAACTTCCTGCCGGGCGTGTTCATCTGTTA TGGCGCGATCATGGGCATCGGCCTGGGCGTCGGTTATCTGACTCCGGTCAAGAACCTGATGCTTTGGTTCGCCGACAACA AGGGCCTCGCCACCGGCATCGCCGTCGCCGGCTTCGGCCTGGCCAAGGCCATTGCCAGCCCACTGATGGAATATCTCATC GGCACGGTTGGCCTGGTCAGCATGTTTTTCATCCTCGCCGCGGTCTACGCGGTGATGATGTTCGTCGGCTTCCTGCTCAT CAAGCGTCCGGCCGGCTGGGTGTACGATCCCGCGACCTCACACGTCAGCCGCAAGACAATCCTCAAGAAGCCCGTGTTCT GGGGCATCTGGATAGCCTTCTATATCAACATCACCTGCGGCCTGGCCCTCATCAGCCAAGAGAAGGACATCCTGCACGAT GTGCTCAAGGCCTTCCCGCAGTATGCCAACCTGAGCCCCGCCAAGTTTGCCGCCGCCATCTCCGGCATCATCGGACTGGT GCTCGCCGTGGACTCCGTGTTCAACACGGCTGGCCGCGTGGGCTTCTCCACACTCTCCGACCACCTGAAGCGCCGCGAGA CCGTCTATCAGGTAATCTTCATCATGTCGATTGCCGTGTGCTTGCTGCAGATCTTCACCAACAGCATCGACAACGCTCTG CTGTGGGCCGTGCTGGCCATGCTGTTCCTCGTCAACGCGGGCTATGGTGGCGGTTTCTCGACGCTGCCCGTGCTGCTTGA TCAGCACTTCGGCACCAAAACCGTCTCCACCACGCACGGTCTGACGCTGAGCGCCTGGGCATTCGCTGGTCTGTCCGGCA ACCAGTTGGCCTCGTTCGTAGTTGCCCACGCGCCTGATCAGGCCCACCGCTACGCCGCACTCATCCCGGTGCTCACCGGC CTGTTCGTTGTGGCCCTGATCAGCATCAGCCTGGTCAAGTACCTCGGCGACAGAAACGTCACGAAGGCCGTCGAAGACCG AGGCTGA
Upstream 100 bases:
>100_bases ACGGGGGCATGCCGTCGTGATGTGCGTGGATATGGGCGGTGCGACTCTCGTTCGGGTCGGCAGGTCATCGTACACCAGTT ACGAAAGGATCCGTCCATAT
Downstream 100 bases:
>100_bases GATGCCGCAAAACAACGATTCTGCCGGAGTCGGGCGCATCGATCGCATCAGTCGATGTACGTCACGATTTTGGCAGAATC GTTGTTGTTGCTGTTGAGTA
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MARFTENRWTSAIIPALLIHIPIGTVYCWSVFKQLIADRLHASPASVEWGFSLAIFFLGMSAAFAGPMVEKNIKKSALVS MVCFVVGFAGTGVSIALNFLPGVFICYGAIMGIGLGVGYLTPVKNLMLWFADNKGLATGIAVAGFGLAKAIASPLMEYLI GTVGLVSMFFILAAVYAVMMFVGFLLIKRPAGWVYDPATSHVSRKTILKKPVFWGIWIAFYINITCGLALISQEKDILHD VLKAFPQYANLSPAKFAAAISGIIGLVLAVDSVFNTAGRVGFSTLSDHLKRRETVYQVIFIMSIAVCLLQIFTNSIDNAL LWAVLAMLFLVNAGYGGGFSTLPVLLDQHFGTKTVSTTHGLTLSAWAFAGLSGNQLASFVVAHAPDQAHRYAALIPVLTG LFVVALISISLVKYLGDRNVTKAVEDRG
Sequences:
>Translated_428_residues MARFTENRWTSAIIPALLIHIPIGTVYCWSVFKQLIADRLHASPASVEWGFSLAIFFLGMSAAFAGPMVEKNIKKSALVS MVCFVVGFAGTGVSIALNFLPGVFICYGAIMGIGLGVGYLTPVKNLMLWFADNKGLATGIAVAGFGLAKAIASPLMEYLI GTVGLVSMFFILAAVYAVMMFVGFLLIKRPAGWVYDPATSHVSRKTILKKPVFWGIWIAFYINITCGLALISQEKDILHD VLKAFPQYANLSPAKFAAAISGIIGLVLAVDSVFNTAGRVGFSTLSDHLKRRETVYQVIFIMSIAVCLLQIFTNSIDNAL LWAVLAMLFLVNAGYGGGFSTLPVLLDQHFGTKTVSTTHGLTLSAWAFAGLSGNQLASFVVAHAPDQAHRYAALIPVLTG LFVVALISISLVKYLGDRNVTKAVEDRG >Mature_427_residues ARFTENRWTSAIIPALLIHIPIGTVYCWSVFKQLIADRLHASPASVEWGFSLAIFFLGMSAAFAGPMVEKNIKKSALVSM VCFVVGFAGTGVSIALNFLPGVFICYGAIMGIGLGVGYLTPVKNLMLWFADNKGLATGIAVAGFGLAKAIASPLMEYLIG TVGLVSMFFILAAVYAVMMFVGFLLIKRPAGWVYDPATSHVSRKTILKKPVFWGIWIAFYINITCGLALISQEKDILHDV LKAFPQYANLSPAKFAAAISGIIGLVLAVDSVFNTAGRVGFSTLSDHLKRRETVYQVIFIMSIAVCLLQIFTNSIDNALL WAVLAMLFLVNAGYGGGFSTLPVLLDQHFGTKTVSTTHGLTLSAWAFAGLSGNQLASFVVAHAPDQAHRYAALIPVLTGL FVVALISISLVKYLGDRNVTKAVEDRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789969, Length=388, Percent_Identity=26.0309278350515, Blast_Score=107, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 45990; Mature: 45859
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARFTENRWTSAIIPALLIHIPIGTVYCWSVFKQLIADRLHASPASVEWGFSLAIFFLGM CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH SAAFAGPMVEKNIKKSALVSMVCFVVGFAGTGVSIALNFLPGVFICYGAIMGIGLGVGYL HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPVKNLMLWFADNKGLATGIAVAGFGLAKAIASPLMEYLIGTVGLVSMFFILAAVYAVMM HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVGFLLIKRPAGWVYDPATSHVSRKTILKKPVFWGIWIAFYINITCGLALISQEKDILHD HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH VLKAFPQYANLSPAKFAAAISGIIGLVLAVDSVFNTAGRVGFSTLSDHLKRRETVYQVIF HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMSIAVCLLQIFTNSIDNALLWAVLAMLFLVNAGYGGGFSTLPVLLDQHFGTKTVSTTHG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCC LTLSAWAFAGLSGNQLASFVVAHAPDQAHRYAALIPVLTGLFVVALISISLVKYLGDRNV CEEHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH TKAVEDRG HHHHHCCC >Mature Secondary Structure ARFTENRWTSAIIPALLIHIPIGTVYCWSVFKQLIADRLHASPASVEWGFSLAIFFLGM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH SAAFAGPMVEKNIKKSALVSMVCFVVGFAGTGVSIALNFLPGVFICYGAIMGIGLGVGYL HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPVKNLMLWFADNKGLATGIAVAGFGLAKAIASPLMEYLIGTVGLVSMFFILAAVYAVMM HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVGFLLIKRPAGWVYDPATSHVSRKTILKKPVFWGIWIAFYINITCGLALISQEKDILHD HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH VLKAFPQYANLSPAKFAAAISGIIGLVLAVDSVFNTAGRVGFSTLSDHLKRRETVYQVIF HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMSIAVCLLQIFTNSIDNALLWAVLAMLFLVNAGYGGGFSTLPVLLDQHFGTKTVSTTHG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCC LTLSAWAFAGLSGNQLASFVVAHAPDQAHRYAALIPVLTGLFVVALISISLVKYLGDRNV CEEHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH TKAVEDRG HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]