Definition Shewanella piezotolerans WP3 chromosome, complete genome.
Accession NC_011566
Length 5,396,476

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 212637113

GI number:

Start: 4615496

End: 4616662

Strand: Reverse

Name: Not Available

Synonym: swp_4406

Alternate gene names: NA

Gene position: NA

Preceding gene: 212637114

Following gene: 212637111

Centisome position: NA

GC content: NA

Gene sequence:

>1167_bases
ATGAAAAAAGCGCTAGCAATTTTGCCCCTCGCCACGTTGGTTTTCGTGCCGACAAGTTCGGCGATTGAAGTATTTAAAGA
TGATAAGAATGCATTTGAAGTTGGTGGTTTTGTTGATGCTCGTATTATAGATACTCAAGGTGTTACTGAAGTCGTAAACG
GCAGCTCTAGAATCAATTTCGGCTTTACTCGAGAGATGTCCAGTGACTGGAGAAGTTACGTTAAGCTAGAATGGGGCGTA
AATCCCTTTGGTAATGCAACGATATCCTATAGTAGTGAGAGTAATTTCGAGACTCAAAGTGGTGATTTTTTAAATAACCG
TTTAGGTTATGTTGGTCTTAGTCATGCTGATTATGGTTCAGTCTCTATTGGTAAGCAGTGGGGCGCATGGTATGACGTGG
TTTATAACACCAACTATGGTTTTGTTTGGGACGGTAATGCATCAGGGACTTATACTTACAATAAGTCTGATGGGGCGATC
AATGGTGTGGGCCGTGGTGATAAAATTATCCAGTATCGCAATGGTTGGGGCGACTTGAGCATTGCTCTGCAGATGCAGCT
CAAGAGCAGCATGACTGATATTGAAGATGATGGCAGTGGCAATCCTAATCGACTGGTCTCAACAGAATACGATAATACTT
ATGGTATTGGTTTAACCTACCAAGCAACAGATATGTTAGTGATTACCGCAGGTGGCAATATTGGTGAACCTGAGGGAACT
ACCGCAAGCGGTCGAGTGATTTCTGAGACTGACTATATTTATGGTTTTGGACTGACCTGGGGCAGTTGGGATGAGCATGG
ATTTTATGCGGCGATGAATCTCAACCAAAATGAGTTCCACGACACCGATAACTTAGGCCGATTCTTGCAAGAGTCGGTTG
GTCTAGAGACCTTAGCTTCTTACTTATTAGACAATAACTTTAAGTTAATGGCCTCATACAATGTATTAGAGGCTGGAGAT
GCTTATGAAGCAGCACATCCTGGAGATGTATTTAAGCGACAATTCGCCGTTGCTGGGCTGCATTATGTTTGGGACAATAG
CTTGGTATTGTACTTAGAAGGTCGCGTCGACTTTAGTGATTTCAGTAGTGATAATCCAGAAAATGAAGCTAAGCAGTCCG
TTTCAGAAGATGATGGCATAGCCATCGGTATTCGATATGTTTTGTAA

Upstream 100 bases:

>100_bases
ATTGCTGTTTTTGAAAATCAATTATGCATATAAAAATCAAGGCCAGCGAATGCGTGACGCTAAAGCAGCAAATGGATAAA
TAACCAAGGTTGGAGATATT

Downstream 100 bases:

>100_bases
AGACTATCGCGAGTAGAAGCGTTAAGGCTTATCAATCTTAAGTGTTTTGATAAGCCCTTTAATTAGGCTATTTCAGTCGG
TAAGTGACCTCGACTCTATC

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>388_residues
MKKALAILPLATLVFVPTSSAIEVFKDDKNAFEVGGFVDARIIDTQGVTEVVNGSSRINFGFTREMSSDWRSYVKLEWGV
NPFGNATISYSSESNFETQSGDFLNNRLGYVGLSHADYGSVSIGKQWGAWYDVVYNTNYGFVWDGNASGTYTYNKSDGAI
NGVGRGDKIIQYRNGWGDLSIALQMQLKSSMTDIEDDGSGNPNRLVSTEYDNTYGIGLTYQATDMLVITAGGNIGEPEGT
TASGRVISETDYIYGFGLTWGSWDEHGFYAAMNLNQNEFHDTDNLGRFLQESVGLETLASYLLDNNFKLMASYNVLEAGD
AYEAAHPGDVFKRQFAVAGLHYVWDNSLVLYLEGRVDFSDFSSDNPENEAKQSVSEDDGIAIGIRYVL

Sequences:
NA

Specific function: NA

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA