Definition | Shewanella piezotolerans WP3 chromosome, complete genome. |
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Accession | NC_011566 |
Length | 5,396,476 |
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Identifier: 212634787
GI number:
Start: 2035205
End: 2037211
Strand: Direct
Name: Not Available
Synonym: swp_1968
Alternate gene names: NA
Gene position: NA
Preceding gene: 212634786
Following gene: 212634788
Centisome position: NA
GC content: NA
Gene sequence:
>2007_bases ATGCACGCTAATGAACTTGAGATCCTAGAACTGACCCAGCAATTAAATCTGCATAATTATCACTACTATGTTGATGATAA CCCGACAATTCCAGATGTTGAGTACGACAGGTTACTTAAAAGGCTGATAGAGCTAGAGACCCAAAGTCCAGAGTTTGCTA AAGCCGACTCGCCTACACAGAGAGTAGGAGGTGAGGCATTAGCTAAGTTTGAACAGATCACCCACCTCAAGCCAATGTTA AGCCTTGATAATGTATTTGATGAAACCGAATTTAATGGCTTTCACTCGAGGATAACCGATAAAGTCGGTACAGCGCTGAG CTATTGCTGTGAACCAAAGCTTGATGGCTTGGCTGTGAGTATTGTGTACCGTGATGGTGTATTTGAGCGAGCAGCGACTC GTGGCGATGGTCAAACGGGTGAGAATATTACTGAAAATGTCCGCACTATTAAGTCAATTCCTTTAAAGTTGCGCGGTGAT AATTTTCCACCATTAGTTGAGGTACGCGGCGAAGTGATTATGCCGCATAAAGCCTTCAATGCGCTTAATGAGCGTGCCCG TGCGAAAGGGGAAAAGCTGTTTGTTAATCCTCGCAATGCAGCTGCGGGCAGTTTACGTCAGTTAGACAGTAAAATTACTG CTAGCCGAGCTTTGGGGTTCTACGCTTATGCACTCGGAGTCGTTGAGCCTGAATCGTGGGAGCTTGCCGATAGCCATTAT GGCCAACTAGAGCAACTGCGCTCATGGGGCGTCCCGGTTAGCCAAGAAGTCAAAGTCTGTGACTCGGTCACGGAAGTCAT GGATTATTACAATGATATTCAGCAACGTCGCAGCAGTTTAGATTTCGAAATCGATGGTGTTGTGTTGAAAGTGAACCAGA TTGCTCATCAGTTGAGTTTAGGTTTTGTGGCTAAAGCGCCGCGCTGGGCGACTGCATTTAAGTTTCCAGCTCAAGAGGAG ATGACCTTATTAGAAGGGGTCGATTTTCAAGTTGGTCGTACTGGAGCGGTTACACCTGTCGCACGTCTTAAGCCTGTATT TGTTGGTGGCGTGACCGTCTCAAATGCCACTTTGCATAATGCTGATGAAATTGCCCGTCTTGGCGTAAAGGTTGGAGATA CCATCATTATTCGCCGAGCAGGCGATGTCATTCCCCAAATTGTTGCAATAGTCGCTGATAAACGTCCAGATGATGCCCAA GATATTGTGTTTCCCGAGCGGTGCCCTGTGTGTGATAGTGAAGTGGAACGTATTGAAGGCGAAGCGGTAGCGCGTTGTAG TGGTGGCTTATTTTGTGAAGCACAACGTAAAGAAGCAATAAAACATTTTGCTTCTAGAAAGGCGCTTGATATCGATGGTA TGGGTGACAAAGTTGTTGAACAGTTAATTGATAAAGAGCTAGTAGAAAGCCCTGCGGATCTATTTAAGCTGACCGCATCA GCGATGACAATGCTAGAGCGTATGGGGATGAAATCAGCGACTAAATTAGTTGCGGCCATTGAAGTCGCCAAAGAGACGAC TTTTGCTCGCTTTCTCTATGCGTTAGGTATTAGAGAAGTGGGAGAAGCCACCGCTGCGAATCTTGCTGCCTACTTTAAAA CACTGGATGCACTAAAAGGCGCGTCAGCAGAAGAGTTTATCAAGGTCGATGATGTTGGAGCGATTGTTGCGGCTCATTTA GCGCACTTCTTGGCACAGCCTCATAATCTTGAAGTGATAGATAAGCTTATTGCGGTGGGAGTTAGCTGGCCAGCAATTGA AGAGGTGGCTGAAGAGGATTTATCACTTAAAGGTCAAACCTGGGTATTAACCGGTACGTTAACACAGCTTAATCGAAATG ATGCTAAAGCTCAGCTGCAGGCATTAGGGGCAAAAGTTGCTGGTAGTGTGTCTAAAAATACCGATTGTTTGGTCGCTGGC GCAGCGGCTGGCTCGAAGTTGACTAAAGCTCAAGAGCTTGGTGTGAAGGTTATTGATGAAGAGGCATTGATTGCTATTTT GTCATAG
Upstream 100 bases:
>100_bases AACGAATTAAAGCACAGGCTTAATTCTGAATAAGTGAATCAACTAAACTTGTTTTAAAAAGGTCGCTTAGGCGGCCTTTG TTATTATTAGGACGAACCAT
Downstream 100 bases:
>100_bases ATAAGCCGCTGCTGATATAAAGCTCCCTAAGGGAGCTTTTATTTTTTTGCTATTGTTATTCCCTTTTAGGGCCTCATTAA CTCACTTTCTGTTTTAAAAA
Product: NAD-dependent DNA ligase
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>668_residues MHANELEILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKADSPTQRVGGEALAKFEQITHLKPML SLDNVFDETEFNGFHSRITDKVGTALSYCCEPKLDGLAVSIVYRDGVFERAATRGDGQTGENITENVRTIKSIPLKLRGD NFPPLVEVRGEVIMPHKAFNALNERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSHY GQLEQLRSWGVPVSQEVKVCDSVTEVMDYYNDIQQRRSSLDFEIDGVVLKVNQIAHQLSLGFVAKAPRWATAFKFPAQEE MTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIARLGVKVGDTIIIRRAGDVIPQIVAIVADKRPDDAQ DIVFPERCPVCDSEVERIEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVESPADLFKLTAS AMTMLERMGMKSATKLVAAIEVAKETTFARFLYALGIREVGEATAANLAAYFKTLDALKGASAEEFIKVDDVGAIVAAHL AHFLAQPHNLEVIDKLIAVGVSWPAIEEVAEEDLSLKGQTWVLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAG AAAGSKLTKAQELGVKVIDEEALIAILS
Sequences:
NA
Specific function: NA
COG id: COG0272
COG function: function code L; NAD-dependent DNA ligase (contains BRCT domain type II)
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA