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The map label for this gene is ygiX [H]

Identifier: 21244692

GI number: 21244692

Start: 4668604

End: 4669269

Strand: Direct

Name: ygiX [H]

Synonym: XAC3974

Alternate gene names: 21244692

Gene position: 4668604-4669269 (Clockwise)

Preceding gene: 21244691

Following gene: 21244693

Centisome position: 90.2

GC content: 63.81

Gene sequence:

>666_bases
ATGCATCTGCTCCTCGTCGAAGACGACACCATGCTGGCCAACGCCATCTGCGACGGTGTGCGTCAGCAGTCATGGACCAT
CGATCATGTCGGTCATGCCAATGCCGCCAAGACGGTGCTGGTGGACCATCGCTACAGTGCGGTGTTGCTGGATATCGGCC
TGCCGGGCGAGTCCGGGCTGAGCGTGATCCGTTTCATGCGCAGCCACTACGATGCCACCCCGGTAATCGCGCTGACCGCG
CGTGGCCAGCTCACCGACCGCATCCGCGGTCTGGATGCCGGCGCCGACGATTATCTGGTCAAGCCGTTTCAGTTCGACGA
GCTGATGGCGCGGCTGCGGGCGGTCACCCGGCGCAGCCAGGGCCGCGTGGTGCCCCTGCTCAGCCACGGCGACGTCTGTA
TGGATCCGAGCAGCCGCAAGGTCACCAAGGACGGCAAATGGGTGGCGCTGAGCGCACACGAATACCGCCTGCTGCTGGCG
TTGATGGAACGTGCCGGACGCGTGGTCACCAAGGATCAGCTGGAAGAAGGCATCTATGGCGGCCCATCCGAAGGGGGCAG
CAACATGATCGCGGTGTATGTGCACCAGTTGCGGCGCAAGCTGGGCGATGCGCTGATCTCCACCGTCTATGGCCAGGGCT
ACATGGTCGGAAAGACCCCGGAATGA

Upstream 100 bases:

>100_bases
CTGGCCTGCGTGCGGTTCGGCCATGCACTAATATTTGCCTAAGCTTCATCACCGACAGTGCCGCGGATCTCGGACTGGCC
CTGCGCACGGCAGAACACCT

Downstream 100 bases:

>100_bases
AGTCGCTGCAGGCACGCATGCTGGCGGCGCTGGCCGCGATCGTTCTGCTGAGCTGGTCCACCTCTCTGTGGATCCTGGTC
GCACTGGTCACCCAGGGTCA

Product: two-component system regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MHLLLVEDDTMLANAICDGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGLSVIRFMRSHYDATPVIALTA
RGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQGRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLA
LMERAGRVVTKDQLEEGIYGGPSEGGSNMIAVYVHQLRRKLGDALISTVYGQGYMVGKTPE

Sequences:

>Translated_221_residues
MHLLLVEDDTMLANAICDGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGLSVIRFMRSHYDATPVIALTA
RGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQGRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLA
LMERAGRVVTKDQLEEGIYGGPSEGGSNMIAVYVHQLRRKLGDALISTVYGQGYMVGKTPE
>Mature_221_residues
MHLLLVEDDTMLANAICDGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGLSVIRFMRSHYDATPVIALTA
RGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQGRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLA
LMERAGRVVTKDQLEEGIYGGPSEGGSNMIAVYVHQLRRKLGDALISTVYGQGYMVGKTPE

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=41.2844036697248, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=41.1764705882353, Blast_Score=156, Evalue=8e-40,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=35.7798165137615, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=34.703196347032, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=33.0316742081448, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=31.2775330396476, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1786599, Length=219, Percent_Identity=32.4200913242009, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1786911, Length=156, Percent_Identity=41.025641025641, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=32.15859030837, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=30, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=26.3392857142857, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790860, Length=217, Percent_Identity=28.110599078341, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=25.9911894273128, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=25, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788550, Length=106, Percent_Identity=31.1320754716981, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=112, Percent_Identity=34.8214285714286, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24328; Mature: 24328

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLLLVEDDTMLANAICDGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGL
CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCHH
SVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQ
HHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCC
GRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGIYG
CCEEEEECCCCEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHCCCCC
GPSEGGSNMIAVYVHQLRRKLGDALISTVYGQGYMVGKTPE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MHLLLVEDDTMLANAICDGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGL
CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCHH
SVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQ
HHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCC
GRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGIYG
CCEEEEECCCCEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHCCCCC
GPSEGGSNMIAVYVHQLRRKLGDALISTVYGQGYMVGKTPE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]