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The map label for this gene is yhjC [H]

Identifier: 21244433

GI number: 21244433

Start: 4383899

End: 4384795

Strand: Direct

Name: yhjC [H]

Synonym: XAC3708

Alternate gene names: 21244433

Gene position: 4383899-4384795 (Clockwise)

Preceding gene: 21244428

Following gene: 77748738

Centisome position: 84.7

GC content: 67.0

Gene sequence:

>897_bases
ATGGATACCCTCGATGCGATGCGCGTGTTCACCGCCGTGGCCGAGCGCAGCGGCTTCAGCGCCGCCGCCGATGCATTGGA
CCGCTCCACTGCCAGCGTTACCCGCCAGGTTGCCGCGCTCGAACAGCGGCTGGGTACCCGCCTGCTCAACCGCACCACCC
GCCGGGTCAGCCTGACCAGTGCCGGTAGCGCCTACTACCAGCGCTGCCTGCAGCTGCTGGCCGATCTGGACGACCTGGAA
GCCACCATTGGCGCGCAAGCGCTGGAGCCGGCCGGCGTGCTGCGGGTGAACGCGCCGGTGAGCTACGGCATCGAGCGCCT
GGGCGCATTGCTGCCGGGATTTCGCGCGCGCTACCCGCAGGTGGAGCTGGACCTGTCGCTGTCCGACCGCCTGGTCGACA
TGGTCGAAGAAGGCTTCGACGTCGCCATCCGCATCACCCGCCAGCCGGCGCCGATGTTGATCGCCCGGCAGTTGGGCAAG
GTCCGCATCCTGGCATGTGCATCGCCGGCCTATCTGGCGCGTGCCGGGACACCCCAGCACCCATCCGATCTGGCTGGCCA
CGAATGCCTGCTCTATCACTACTCGCCCAACGGCGATGACGCGCGCTTTCAGGGGCCGCAAAGCGATATCGACGTGCGCC
TGCACGGCGGCCTGCGCGCCAACAACGGGCATGTGCTGAACGCTGCCGCGCTGGCCGGGCAAGGCATCGTGATCCAGCCG
GATTTTCTGGCCGAACCGCACATCGCAGCAGGGCGTCTGGTACGCATTCTTCCCGAATACGCAATGGGCGAGATCGGCAT
CTTTGCGGTCTATACCAGCCGCAGCCATCTGGCGCCGAAGGTGCGCAGCTTTATCGATTACCTGGTCGAATGCATGCCCG
CGCCGGGGCCTGGTTGA

Upstream 100 bases:

>100_bases
GGCTCCGTTGAGGACCGCCACAGCCTATTCCTTACAAAAATCTGATAAATACGCGTGCTTCAGATAATTTATTTCGGCAA
AAGGAACAATCGGAGCCGCC

Downstream 100 bases:

>100_bases
AGGTTGAGGGCCAGGCGAGGAAATACCTCGCGCCAGCCGGCGCGTGCACGCATTCGGGATTCGGGATTCAGTCTGCGCAG
GCCAACACCTGTCTCCAGAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDTLDAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSAYYQRCLQLLADLDDLE
ATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELDLSLSDRLVDMVEEGFDVAIRITRQPAPMLIARQLGK
VRILACASPAYLARAGTPQHPSDLAGHECLLYHYSPNGDDARFQGPQSDIDVRLHGGLRANNGHVLNAAALAGQGIVIQP
DFLAEPHIAAGRLVRILPEYAMGEIGIFAVYTSRSHLAPKVRSFIDYLVECMPAPGPG

Sequences:

>Translated_298_residues
MDTLDAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSAYYQRCLQLLADLDDLE
ATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELDLSLSDRLVDMVEEGFDVAIRITRQPAPMLIARQLGK
VRILACASPAYLARAGTPQHPSDLAGHECLLYHYSPNGDDARFQGPQSDIDVRLHGGLRANNGHVLNAAALAGQGIVIQP
DFLAEPHIAAGRLVRILPEYAMGEIGIFAVYTSRSHLAPKVRSFIDYLVECMPAPGPG
>Mature_298_residues
MDTLDAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTSAGSAYYQRCLQLLADLDDLE
ATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQVELDLSLSDRLVDMVEEGFDVAIRITRQPAPMLIARQLGK
VRILACASPAYLARAGTPQHPSDLAGHECLLYHYSPNGDDARFQGPQSDIDVRLHGGLRANNGHVLNAAALAGQGIVIQP
DFLAEPHIAAGRLVRILPEYAMGEIGIFAVYTSRSHLAPKVRSFIDYLVECMPAPGPG

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=38.7205387205387, Blast_Score=180, Evalue=9e-47,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=36.3321799307958, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=34.4481605351171, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787128, Length=281, Percent_Identity=32.3843416370107, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1789440, Length=283, Percent_Identity=30.0353356890459, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=32.3232323232323, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=28.4210526315789, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=32.4110671936759, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=25.8620689655172, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788706, Length=294, Percent_Identity=25.1700680272109, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787879, Length=144, Percent_Identity=34.0277777777778, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786713, Length=148, Percent_Identity=29.7297297297297, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787806, Length=140, Percent_Identity=31.4285714285714, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI157672245, Length=149, Percent_Identity=32.2147651006711, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32111; Mature: 32111

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLDAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTS
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
AGSAYYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQ
CCHHHHHHHHHHHHCHHHHHHHHCHHHCCCCCEEEECCCHHHHHHHHHHHCCCHHCCCCC
VELDLSLSDRLVDMVEEGFDVAIRITRQPAPMLIARQLGKVRILACASPAYLARAGTPQH
EEEECCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCHHHHCCCCCCC
PSDLAGHECLLYHYSPNGDDARFQGPQSDIDVRLHGGLRANNGHVLNAAALAGQGIVIQP
CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCEECCCCEEEEHHHHCCCCEEECC
DFLAEPHIAAGRLVRILPEYAMGEIGIFAVYTSRSHLAPKVRSFIDYLVECMPAPGPG
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDTLDAMRVFTAVAERSGFSAAADALDRSTASVTRQVAALEQRLGTRLLNRTTRRVSLTS
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC
AGSAYYQRCLQLLADLDDLEATIGAQALEPAGVLRVNAPVSYGIERLGALLPGFRARYPQ
CCHHHHHHHHHHHHCHHHHHHHHCHHHCCCCCEEEECCCHHHHHHHHHHHCCCHHCCCCC
VELDLSLSDRLVDMVEEGFDVAIRITRQPAPMLIARQLGKVRILACASPAYLARAGTPQH
EEEECCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCHHHHCCCCCCC
PSDLAGHECLLYHYSPNGDDARFQGPQSDIDVRLHGGLRANNGHVLNAAALAGQGIVIQP
CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCEECCCCEEEEHHHHCCCCEEECC
DFLAEPHIAAGRLVRILPEYAMGEIGIFAVYTSRSHLAPKVRSFIDYLVECMPAPGPG
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]