Click here to switch to the map view.

The map label for this gene is ybjY [H]

Identifier: 21244363

GI number: 21244363

Start: 4315736

End: 4317007

Strand: Direct

Name: ybjY [H]

Synonym: XAC3638

Alternate gene names: 21244363

Gene position: 4315736-4317007 (Clockwise)

Preceding gene: 21244359

Following gene: 21244364

Centisome position: 83.39

GC content: 70.2

Gene sequence:

>1272_bases
ATGATTCGCGATACCTCCGCCCAGGACCAGGTTCTCCGTACACCCGCCCAGCGCGCGCCGTGGCGCCGTTGGCTGTGGCC
CGGTATCGCCACGGTGGCGGTGCTGGCCGGCATCGGCTGGGCCGTGACTGCGTGGAGCGCCGGCAGCCGCTCGTTCGACG
CCAGCCGCGTGCGCATCGCCACCGTCACCCAGGGCGACCTGGTGCGCGACATCGCCGCCGACGGCCGCGTGATCGCTGCC
AACAGCCCGGTGCTGTACGCCATCTCGGCCGGCACGGTGACGCTGAGCGTGGTGGCCGGCGACGTGGTCAAGCAGGGCCA
GGAACTGGCGCGCATCGACAGCCCCGAGTTGCGCAGCAAGCTCGCGCAGGAGCAGGCCACCCTGGCGGGCCTGGAGGCCG
AATCCAGCCGCGCGGCCCTGGATGCCACCCTGGCGCGTGCCAACGCCAGCAAGCTCACCGACCAGGCCCAGATCGACAAG
CAGGCCGCCGCGCGCGACCTGGAGCGCTACCAGCGCGGCTTTGACGGCGGCGCCGTGCCGCAGGTGGAACTGGCCAAGGC
GCAGGACACCTTGAAGAAGACCGATATCGACCTGCAGCATGCCCAGCGCGATGCCGCGTTGAAGAGCCAGGGCGCGGACC
TGGATTCGCGCAACAAGCGCCTGCTGGCGGACCGCCAACGCGCTGTGGTGGCCGAAGTGCAGCGCCAGGTGGACGCGCTC
ACGCTGCGCTCGCCCTTCGATGGTCAGGTCGGCCAGGTGCAGGCCGTGCAGCACACCCAGGTCGCTGCGAACGCGCCGAT
TCTGGGCGTGGTGGATCTGTCCAAGTTCGAAGTGGAGATCAAGGTGCCGGAGAGTTTCGCGCGCGATCTGGCGATCGGCA
TGCCGGCCCAGCTCACCAGCGGCAGCGGCGAACCGTTCGCGGGCGCCGTCTCGGCGGTGTCGCCGGAAGTGGTCAACGGC
GAAGTCACCGCGCGCATCCGCTTCACCGACAAGCAGCCGCCGGGCCTGCGCCAGAGCCAGCGCATGAGCGCACGCGTGCT
GATGGATACGCGCCGCAACGTGCTCAAGGTCGAACGCGGCCCGTTCCTCGAACAATCCGGCGGCAGCTATGCCTATGTGA
TGGATGGCAACACGGCGGTGCGCCGCCCCGTGCGCATGGGCGTCAGCAGCCTGGGCGAAGTGCAGGTGCTCTCCGGGCTA
CAGGTCGGCGACCGCGTGGTGGTCTCCGGCGCAGACAACTTTGGCGACGCGCCGCGCGTCACCGTCCACTGA

Upstream 100 bases:

>100_bases
CGGACACTGGTCATCACGCCATAAAATTCATCTATTTCAATGACCTAAGCGTTGGCACAGGTCCTGCTTTATTGCAGCGA
CGCCACCGAGCCAGCCGATC

Downstream 100 bases:

>100_bases
TTCGATCGTTCCCACTCGTCGCACACTCTCTTCGCAAAGGAATCGGCAATGCTCAAGATGCAAGCAGTCTCCAAGGTCTT
CCGCACCGAACAGGTGGAAA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MIRDTSAQDQVLRTPAQRAPWRRWLWPGIATVAVLAGIGWAVTAWSAGSRSFDASRVRIATVTQGDLVRDIAADGRVIAA
NSPVLYAISAGTVTLSVVAGDVVKQGQELARIDSPELRSKLAQEQATLAGLEAESSRAALDATLARANASKLTDQAQIDK
QAAARDLERYQRGFDGGAVPQVELAKAQDTLKKTDIDLQHAQRDAALKSQGADLDSRNKRLLADRQRAVVAEVQRQVDAL
TLRSPFDGQVGQVQAVQHTQVAANAPILGVVDLSKFEVEIKVPESFARDLAIGMPAQLTSGSGEPFAGAVSAVSPEVVNG
EVTARIRFTDKQPPGLRQSQRMSARVLMDTRRNVLKVERGPFLEQSGGSYAYVMDGNTAVRRPVRMGVSSLGEVQVLSGL
QVGDRVVVSGADNFGDAPRVTVH

Sequences:

>Translated_423_residues
MIRDTSAQDQVLRTPAQRAPWRRWLWPGIATVAVLAGIGWAVTAWSAGSRSFDASRVRIATVTQGDLVRDIAADGRVIAA
NSPVLYAISAGTVTLSVVAGDVVKQGQELARIDSPELRSKLAQEQATLAGLEAESSRAALDATLARANASKLTDQAQIDK
QAAARDLERYQRGFDGGAVPQVELAKAQDTLKKTDIDLQHAQRDAALKSQGADLDSRNKRLLADRQRAVVAEVQRQVDAL
TLRSPFDGQVGQVQAVQHTQVAANAPILGVVDLSKFEVEIKVPESFARDLAIGMPAQLTSGSGEPFAGAVSAVSPEVVNG
EVTARIRFTDKQPPGLRQSQRMSARVLMDTRRNVLKVERGPFLEQSGGSYAYVMDGNTAVRRPVRMGVSSLGEVQVLSGL
QVGDRVVVSGADNFGDAPRVTVH
>Mature_423_residues
MIRDTSAQDQVLRTPAQRAPWRRWLWPGIATVAVLAGIGWAVTAWSAGSRSFDASRVRIATVTQGDLVRDIAADGRVIAA
NSPVLYAISAGTVTLSVVAGDVVKQGQELARIDSPELRSKLAQEQATLAGLEAESSRAALDATLARANASKLTDQAQIDK
QAAARDLERYQRGFDGGAVPQVELAKAQDTLKKTDIDLQHAQRDAALKSQGADLDSRNKRLLADRQRAVVAEVQRQVDAL
TLRSPFDGQVGQVQAVQHTQVAANAPILGVVDLSKFEVEIKVPESFARDLAIGMPAQLTSGSGEPFAGAVSAVSPEVVNG
EVTARIRFTDKQPPGLRQSQRMSARVLMDTRRNVLKVERGPFLEQSGGSYAYVMDGNTAVRRPVRMGVSSLGEVQVLSGL
QVGDRVVVSGADNFGDAPRVTVH

Specific function: Efflux transporter for macrolide antibiotics [H]

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081796, Length=398, Percent_Identity=28.643216080402, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 45225; Mature: 45225

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRDTSAQDQVLRTPAQRAPWRRWLWPGIATVAVLAGIGWAVTAWSAGSRSFDASRVRIA
CCCCCCCHHHHHHCCHHHCCCHHHHCCHHHHHHHHHCCCHHEEEECCCCCCCCCCEEEEE
TVTQGDLVRDIAADGRVIAANSPVLYAISAGTVTLSVVAGDVVKQGQELARIDSPELRSK
EECCCHHHHHHHCCCEEEEECCCEEEEEECCCEEEEEEHHHHHHCCHHHHHCCCHHHHHH
LAQEQATLAGLEAESSRAALDATLARANASKLTDQAQIDKQAAARDLERYQRGFDGGAVP
HHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QVELAKAQDTLKKTDIDLQHAQRDAALKSQGADLDSRNKRLLADRQRAVVAEVQRQVDAL
CEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHE
TLRSPFDGQVGQVQAVQHTQVAANAPILGVVDLSKFEVEIKVPESFARDLAIGMPAQLTS
EECCCCCCCCCCEEEHHHHHHHCCCCEEEEEECEEEEEEEECCHHHHHHHHCCCCCEECC
GSGEPFAGAVSAVSPEVVNGEVTARIRFTDKQPPGLRQSQRMSARVLMDTRRNVLKVERG
CCCCCCCCHHHHCCCCEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEECCC
PFLEQSGGSYAYVMDGNTAVRRPVRMGVSSLGEVQVLSGLQVGDRVVVSGADNFGDAPRV
CCEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEECCCCCCCCCCE
TVH
EEC
>Mature Secondary Structure
MIRDTSAQDQVLRTPAQRAPWRRWLWPGIATVAVLAGIGWAVTAWSAGSRSFDASRVRIA
CCCCCCCHHHHHHCCHHHCCCHHHHCCHHHHHHHHHCCCHHEEEECCCCCCCCCCEEEEE
TVTQGDLVRDIAADGRVIAANSPVLYAISAGTVTLSVVAGDVVKQGQELARIDSPELRSK
EECCCHHHHHHHCCCEEEEECCCEEEEEECCCEEEEEEHHHHHHCCHHHHHCCCHHHHHH
LAQEQATLAGLEAESSRAALDATLARANASKLTDQAQIDKQAAARDLERYQRGFDGGAVP
HHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QVELAKAQDTLKKTDIDLQHAQRDAALKSQGADLDSRNKRLLADRQRAVVAEVQRQVDAL
CEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHE
TLRSPFDGQVGQVQAVQHTQVAANAPILGVVDLSKFEVEIKVPESFARDLAIGMPAQLTS
EECCCCCCCCCCEEEHHHHHHHCCCCEEEEEECEEEEEEEECCHHHHHHHHCCCCCEECC
GSGEPFAGAVSAVSPEVVNGEVTARIRFTDKQPPGLRQSQRMSARVLMDTRRNVLKVERG
CCCCCCCCHHHHCCCCEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEECCC
PFLEQSGGSYAYVMDGNTAVRRPVRMGVSSLGEVQVLSGLQVGDRVVVSGADNFGDAPRV
CCEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEECCCCCCCCCCE
TVH
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]