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The map label for this gene is xpsD [H]

Identifier: 21244259

GI number: 21244259

Start: 4178555

End: 4180846

Strand: Reverse

Name: xpsD [H]

Synonym: XAC3534

Alternate gene names: 21244259

Gene position: 4180846-4178555 (Counterclockwise)

Preceding gene: 21244260

Following gene: 21244258

Centisome position: 80.78

GC content: 62.43

Gene sequence:

>2292_bases
ATGAGTGAACGCATGACGCCGCGCCTGTTTCCCGTGTCCCTGCTGATTGGCCTGCTGGCCGGTTGCGCCACCACTCCGCC
GCCGGACGTGCGCCGCAACGCGCGCCTGGATCCGCAAGTCGGTGCTGCCGGCGCCACCCGGACCCCCGCCGAGCAGCGCG
CCGACGGCGATGCCAACGCCAAGCCCAGTCCGGTGATCCGGCGCGGCAGCGGCACCATGATCAACCAGGGCGCCGCGTCC
GCGCCGGCGCCCACGCTGGGCATGGCCAGCAGCGGCAGCGCCACCTTCAATTTCGAAGGCGAATCGCTGCAGGCGGTGGT
CAAGGCGATCCTGGGCGACATGCTCGGCCAGAACTACGTCATCGCGCCGGGCGTGCAGGGCACCGTGACCTTGGCCACGC
CCAATCCGGTGTCGCCGGCGCAGGCCCTGAATCTGTTGGAAATGGTGCTGGGCTGGAACAACGCCCGCATGGTGTTCAGC
GGTGGCCGCTACAACATCGTGCCGGCCGACCAGGCGCTGGCCGGCACCGTGGCGCCCAGCACCGCATCGCCATCGGCCGC
ACGCGGTTTCGAGGTGCGCGTGGTGCCGTTGAAGTTCATTTCCGCCAGCGAGATGAAGAAGGTGCTGGAGCCGTACGCAC
GCCCGAATGCCATCGTCGGCACCGATCCGGCGCGCAATGTGATCACCCTGGGCGGCACCCGCGCCGAGCTGGAAAACTAT
CTGCGCACCGTGCAGATCTTCGACGTGGACTGGTTGTCGGGCATGTCGGTGGGCGTGTTTCCGATCCAGTCCGGCAAGGC
CGAAAAAGTCTCTGCCGATCTGGAAAAGGTCTTCGGCGAGCAGAGCAAGACCCCCAGCGCCGGCATGTTCCGTTTCATGC
CGCTGGAAAACGCCAACGCGGTGCTGGTGATCACCCCGCAGCCGCGTTATCTGGATCAGATCCAGCAGTGGCTGGACCGT
ATCGACAGTGCCGGTGGCGGCGTGCGGCTGTTCTCCTACGAGCTGAAGTACATCAAGGCCAAGGATCTGGCCGATCGTCT
TTCTGAAGTGTTCGGCGGCCGCAGCAACGGTGGCGATTCCAATGCGTCGCTGGCGCCGGGGTCGGAAACCAGCGTGCTTG
GCGGCACGCTCGGCAATCGCGACAGCAGCCTGGGCAGCAGCTCCGGCATGACCGGCGGCAGCATCGGCGACAGCGGCGAT
GGCAGTTCGTCGGGCAGCAGTTTCGGCAGCAGCGGAAGTGGCAGCAGCAGTGGTGGTCTGGGTAACGGCAGCCTGCAGCT
GTCGCCGCGCAGCAATGGCAACGGCGCGGTGACGCTGGAAGTGGCCGGCGACAAGGTGGGTGTCTCGGCGGTGGCCGAGA
CCAATACCCTGCTGGTGCGCTCCACGCCGCAGGCGTGGAGCTCGATCCGCGACGTGATCGAGAAGCTCGACGTGATGCCG
ATGCAGGTGCATATCGAAGCGCAGGTGGCCGAGGTCAATCTGACTGGCGCGCTGAGTTACGGCGTCAATTGGTATTTCGA
GAATGCTGTGACAACACCGTTCAATGCCGATGGCAGTGGCGGACCTGCCCTGCCATCGGCTGCGGGCCGCAATATCTGGG
GTGATATCGCCGGTCGCGTAACCGATGGCGGCGTTGCCTGGACGTTCCTTGGCAAGAATGCAGCGGCAATCATCAGTGCG
CTGGATACCGTGAGCAACGTACGTCTGCTGCAGACGCCCTCGGTATTCGTGCGAAACAACGCAGAAGCCACGCTCAACGT
GGGCTCGCGTATCCCGATCAATTCCACCTCAATCAACACAGGGCTGGGCAGCGATAGCAGTTACTCGTCGGTGCAATACA
TCGATACAGGTGTGATTCTGAAGGTGCGTCCGCGCGTCACCAAGGACGGCATGGTATTTCTGGACATCGTGCAGGAAATA
AGTACGCCCGGAGCACGACCAGCAGCGTGTACGGCGGCAACCACTACGACCGTCAACAGCGCTGCTTGTAACGTCGATAT
CAACACGCGCCGTGTCAAAACCGAAGCTGCGGTACAGAGCGGCGACACTATGATGCTAGCCGGCCTGATTGATGACAGCA
CGACGAATGGTAGCGTGGGAGTACCATTCCTCAGTAAGTTGCCCATCGTAGGTGCTCTTTTTGGACGTAAGACACAGAAT
ACGGATCGTCGTGAGGTTATTGTCCTTATCACACCTTCAATTGTGCGTAATCCAAAGGAGAGTCGCGATTTGACGGATGA
ATACGCCAAGAAATTCAGGGCAATGCAACCGATAAGTCGGGATGGAAAATAA

Upstream 100 bases:

>100_bases
CCTCCGACGATCAGATGCGTGCCATCCGCGAACGCATCGAAGCCCGACGCCGCCAGCTGCAACAGCAGCGCCAGAGCGGC
TCTACCCCCGGTCAGACCCA

Downstream 100 bases:

>100_bases
CATTGACCGTCGTGTAATACTAATAAAAAGGATCTTTGTGAAGAATATTAATGGAAGTAAAAAGAAATTTCTCGCGATTT
TTGTTGGAATGTGTGCTTTT

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 763; Mature: 762

Protein sequence:

>763_residues
MSERMTPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATRTPAEQRADGDANAKPSPVIRRGSGTMINQGAAS
APAPTLGMASSGSATFNFEGESLQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFS
GGRYNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENY
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANAVLVITPQPRYLDQIQQWLDR
IDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGRSNGGDSNASLAPGSETSVLGGTLGNRDSSLGSSSGMTGGSIGDSGD
GSSSGSSFGSSGSGSSSGGLGNGSLQLSPRSNGNGAVTLEVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMP
MQVHIEAQVAEVNLTGALSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISA
LDTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEI
STPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQN
TDRREVIVLITPSIVRNPKESRDLTDEYAKKFRAMQPISRDGK

Sequences:

>Translated_763_residues
MSERMTPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATRTPAEQRADGDANAKPSPVIRRGSGTMINQGAAS
APAPTLGMASSGSATFNFEGESLQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFS
GGRYNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENY
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANAVLVITPQPRYLDQIQQWLDR
IDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGRSNGGDSNASLAPGSETSVLGGTLGNRDSSLGSSSGMTGGSIGDSGD
GSSSGSSFGSSGSGSSSGGLGNGSLQLSPRSNGNGAVTLEVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMP
MQVHIEAQVAEVNLTGALSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISA
LDTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEI
STPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQN
TDRREVIVLITPSIVRNPKESRDLTDEYAKKFRAMQPISRDGK
>Mature_762_residues
SERMTPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATRTPAEQRADGDANAKPSPVIRRGSGTMINQGAASA
PAPTLGMASSGSATFNFEGESLQAVVKAILGDMLGQNYVIAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSG
GRYNIVPADQALAGTVAPSTASPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENYL
RTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANAVLVITPQPRYLDQIQQWLDRI
DSAGGGVRLFSYELKYIKAKDLADRLSEVFGGRSNGGDSNASLAPGSETSVLGGTLGNRDSSLGSSSGMTGGSIGDSGDG
SSSGSSFGSSGSGSSSGGLGNGSLQLSPRSNGNGAVTLEVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMPM
QVHIEAQVAEVNLTGALSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISAL
DTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEIS
TPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQNT
DRREVIVLITPSIVRNPKESRDLTDEYAKKFRAMQPISRDGK

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=333, Percent_Identity=28.5285285285285, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1789793, Length=290, Percent_Identity=25.5172413793103, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 79496; Mature: 79364

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERMTPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATRTPAEQRADGDANA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
KPSPVIRRGSGTMINQGAASAPAPTLGMASSGSATFNFEGESLQAVVKAILGDMLGQNYV
CCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE
IAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGGRYNIVPADQALAGTVAPS
EECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCHHHHCCCCCC
TASPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENY
CCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHH
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANA
HHEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCE
VLVITPQPRYLDQIQQWLDRIDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGRSNGGDS
EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCC
NASLAPGSETSVLGGTLGNRDSSLGSSSGMTGGSIGDSGDGSSSGSSFGSSGSGSSSGGL
CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GNGSLQLSPRSNGNGAVTLEVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMP
CCCEEEECCCCCCCCEEEEEECCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHCCCE
MQVHIEAQVAEVNLTGALSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRV
EEEEEEEEEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEE
TDGGVAWTFLGKNAAAIISALDTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINT
ECCCEEEEEECCCHHHHHHHHHHHHCEEEEECCCEEEECCCCEEEECCCCCCCCCCCCCC
GLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPAACTAATTTTVNS
CCCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECC
AACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQN
EEEEEECCCCEEEHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHCCCCCC
TDRREVIVLITPSIVRNPKESRDLTDEYAKKFRAMQPISRDGK
CCCCEEEEEECCHHHCCCCHHCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SERMTPRLFPVSLLIGLLAGCATTPPPDVRRNARLDPQVGAAGATRTPAEQRADGDANA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
KPSPVIRRGSGTMINQGAASAPAPTLGMASSGSATFNFEGESLQAVVKAILGDMLGQNYV
CCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEE
IAPGVQGTVTLATPNPVSPAQALNLLEMVLGWNNARMVFSGGRYNIVPADQALAGTVAPS
EECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCHHHHCCCCCC
TASPSAARGFEVRVVPLKFISASEMKKVLEPYARPNAIVGTDPARNVITLGGTRAELENY
CCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHH
LRTVQIFDVDWLSGMSVGVFPIQSGKAEKVSADLEKVFGEQSKTPSAGMFRFMPLENANA
HHEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCE
VLVITPQPRYLDQIQQWLDRIDSAGGGVRLFSYELKYIKAKDLADRLSEVFGGRSNGGDS
EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHCCCCCCCCC
NASLAPGSETSVLGGTLGNRDSSLGSSSGMTGGSIGDSGDGSSSGSSFGSSGSGSSSGGL
CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GNGSLQLSPRSNGNGAVTLEVAGDKVGVSAVAETNTLLVRSTPQAWSSIRDVIEKLDVMP
CCCEEEECCCCCCCCEEEEEECCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHCCCE
MQVHIEAQVAEVNLTGALSYGVNWYFENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRV
EEEEEEEEEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEE
TDGGVAWTFLGKNAAAIISALDTVSNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINT
ECCCEEEEEECCCHHHHHHHHHHHHCEEEEECCCEEEECCCCEEEECCCCCCCCCCCCCC
GLGSDSSYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEISTPGARPAACTAATTTTVNS
CCCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECC
AACNVDINTRRVKTEAAVQSGDTMMLAGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQN
EEEEEECCCCEEEHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHCCHHHHHHCCCCCC
TDRREVIVLITPSIVRNPKESRDLTDEYAKKFRAMQPISRDGK
CCCCEEEEEECCHHHCCCCHHCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]