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The map label for this gene is smpA [H]

Identifier: 21242267

GI number: 21242267

Start: 1750349

End: 1750744

Strand: Reverse

Name: smpA [H]

Synonym: XAC1516

Alternate gene names: 21242267

Gene position: 1750744-1750349 (Counterclockwise)

Preceding gene: 21242270

Following gene: 21242264

Centisome position: 33.83

GC content: 61.11

Gene sequence:

>396_bases
ATGCGTAATCTCCTGCTGGTCGCCGCCGTTGCTCTTTCCACCGCTGGCTGCGGCATCATCTACAAGCAGCCGATCTACCA
GGGCAATCTGATCAAACAGAACGCCGTGGAGCAACTGCAGGTAGGCCAGAGCAAGCAGCAGGTCAGCGCGTTGCTGGGCA
CGCCCTCGATCCCCGACCCGTTCCATGCCCAGCGCTGGGACTATACCTCCACGCAGCGCGTGGACCGTCTGGCGCGTACC
GAGATCAAGAATTTCACTGTGTTCTTCGAGAACGAACAGGTCGTGCGCTGGGAAGGCGACTATTTCCCGTCGCAGGACGA
GCAGCTGGCCAAAGCCGCGCCCAAGCAATTCGGCCGCAACCTGGCACGCGACAAGAAGAAGCAACGCGGCCGTTGA

Upstream 100 bases:

>100_bases
TCTCCGTTCATTGGCGATTTAGCGCCAGCTGCCATCAAACGGGTCGCGGCGACCGGCGGAAGTGTATCATCGGCGTGATT
TCCTCAGCACTTAATCCCCG

Downstream 100 bases:

>100_bases
TGCGGTTGCTCTGCGGTGTCGTGATCGCCTGACCGGACCAAAACGCATCCCCTTAAACGGATGCGTTTTTCGTTTTGCCG
GATGCCAAAGAGCGCTTCAG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MRNLLLVAAVALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLART
EIKNFTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRNLARDKKKQRGR

Sequences:

>Translated_131_residues
MRNLLLVAAVALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLART
EIKNFTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRNLARDKKKQRGR
>Mature_131_residues
MRNLLLVAAVALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLART
EIKNFTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRNLARDKKKQRGR

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 14922; Mature: 14922

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLLLVAAVALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDP
CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
FHAQRWDYTSTQRVDRLARTEIKNFTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRN
CCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
LARDKKKQRGR
HHHHHHHHCCC
>Mature Secondary Structure
MRNLLLVAAVALSTAGCGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDP
CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
FHAQRWDYTSTQRVDRLARTEIKNFTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRN
CCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
LARDKKKQRGR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]