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The map label for this gene is ypjD [C]

Identifier: 21242041

GI number: 21242041

Start: 1476717

End: 1477508

Strand: Reverse

Name: ypjD [C]

Synonym: XAC1288

Alternate gene names: 21242041

Gene position: 1477508-1476717 (Counterclockwise)

Preceding gene: 21242049

Following gene: 21242039

Centisome position: 28.55

GC content: 66.41

Gene sequence:

>792_bases
ATGACAATCGTTCTCATCGCGTTCGCCCTGTATCTGCTGGCCACGGCGCTGCTCACCTGGGCGGTGTTGCGCGATGGCAA
CCAGTCGCCTGCGCGCTGGCTGGCGCCCGCATTGGCTGCAGTGGCGTTGCACGCCGGTTACCACGTGCTGGTGGCGGTGC
GCACCGCGGGCGGGCCGGACATGCACTTCTTCGCGGCACTGTCGTTATGCGGGCTGGGCATGGCTGCGCTGACGGCGGTG
TTCGGTGGCCGCGGGCGGATGGCGGCAGTGGGTGTGGTGGTGTTCCCGCTTTCGGCGATCCTGTTGGCCAGCTACCACGC
CTACGGCCACGAGCCCAGCTCGGATCTGGGCTGGCGACTCGAATTGCACGCGTGGCTGGCCTTGCTGGCCTACGCCACCC
TGGGCATCGCAGCGCTGCTGGCAATCATGCTGTGGCTGCAGGAACGCGCGCTGCGGCGGCGCGATTTCCATAGCTGGCTG
CGCGCACTGCCACCGCTGACCGAGCTTGAAACGCTGCTGTTCCGCACGATCACGGTGGGCTTTGTGCTGTTGAGCCTGAC
CCTGCTGACCGGCCTGTTGTTCGTGCAGGACTTCCTGGCGCAGCGGCTATTGCAAAAGACCGTGCTCAGCATCCTGTCGT
GGATCGTGTTCGGTGCGCTGCTGATCGGCCGCTGGCGCAATGGCTGGCGCGGCACCAAGGCGGTGCACTGGACGCTGACC
GCGATGGCGCTGCTGGTGCTATCGTTCTTCGGCAGCAAGTTCGTCATCGAGCTGGTGCTGGGGCCGCGTTGA

Upstream 100 bases:

>100_bases
AAGCGACCCGCGGCCCAGGCTTCTCCGATTCCCGATTCCCGATTCCCGATTCCCGACTCGCCAATCCCCAATCCCCGCCC
CACCATGCGAAACTTCCACG

Downstream 100 bases:

>100_bases
GCGCCTTGGGCGTACGCGTGCGCTGGGCGGGCGCGCATGGATCGATCTTGTGCAGCCTGCGACGGGCATAGACCCGCACC
AGACTGACACTGCGATCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MTIVLIAFALYLLATALLTWAVLRDGNQSPARWLAPALAAVALHAGYHVLVAVRTAGGPDMHFFAALSLCGLGMAALTAV
FGGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRLELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWL
RALPPLTELETLLFRTITVGFVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLT
AMALLVLSFFGSKFVIELVLGPR

Sequences:

>Translated_263_residues
MTIVLIAFALYLLATALLTWAVLRDGNQSPARWLAPALAAVALHAGYHVLVAVRTAGGPDMHFFAALSLCGLGMAALTAV
FGGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRLELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWL
RALPPLTELETLLFRTITVGFVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLT
AMALLVLSFFGSKFVIELVLGPR
>Mature_262_residues
TIVLIAFALYLLATALLTWAVLRDGNQSPARWLAPALAAVALHAGYHVLVAVRTAGGPDMHFFAALSLCGLGMAALTAVF
GGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRLELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWLR
ALPPLTELETLLFRTITVGFVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLTA
MALLVLSFFGSKFVIELVLGPR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=258, Percent_Identity=27.906976744186, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28793; Mature: 28662

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVLIAFALYLLATALLTWAVLRDGNQSPARWLAPALAAVALHAGYHVLVAVRTAGGPD
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
MHFFAALSLCGLGMAALTAVFGGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWLRALPPLTELETLLFRTITVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AMALLVLSFFGSKFVIELVLGPR
HHHHHHHHHHCHHHHHHHHCCCC
>Mature Secondary Structure 
TIVLIAFALYLLATALLTWAVLRDGNQSPARWLAPALAAVALHAGYHVLVAVRTAGGPD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
MHFFAALSLCGLGMAALTAVFGGRGRMAAVGVVVFPLSAILLASYHAYGHEPSSDLGWRL
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ELHAWLALLAYATLGIAALLAIMLWLQERALRRRDFHSWLRALPPLTELETLLFRTITVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FVLLSLTLLTGLLFVQDFLAQRLLQKTVLSILSWIVFGALLIGRWRNGWRGTKAVHWTLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AMALLVLSFFGSKFVIELVLGPR
HHHHHHHHHHCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]