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The map label for this gene is ycfJ [H]

Identifier: 21241449

GI number: 21241449

Start: 803993

End: 804373

Strand: Direct

Name: ycfJ [H]

Synonym: XAC0678

Alternate gene names: 21241449

Gene position: 803993-804373 (Clockwise)

Preceding gene: 21241448

Following gene: 21241450

Centisome position: 15.53

GC content: 64.83

Gene sequence:

>381_bases
ATGAAAATGCGCACCTCCCTGCTGGGTATGTCCCTGATCGGCCTGATGGCGACGAGCACCTTCGCACAAGCTCAAAACTA
TTCGCATCAGCAGCGCTATACCGAAGCGGACGAGGGTCGCAGGTTCAATGACGGCACCCGCGTGCGCTGCCGCAATGTCG
AAGTGCAAAAGAACTCGACCGACCCGAACCGCATCGGCGGGACGCTGGCCGGCGCTGCAATCGGTGGCCTGCTGGGCAAC
CAGGTTGGCGGCGGTAACGGCAAGAAGCTGGCGACCGTGGCAGGCGCCGTGGCGGGCGGTGCGGCAGGCCGCACCATCCA
GGGCAATCGCCAGCAGGCCAACGGCAATCGCCAAGTCGAGCGCGTCTGCGAACGTCGCTGA

Upstream 100 bases:

>100_bases
AGCCTGAATAGCCAGGTGTGCGCTTCACGTTATGTTCTCGAGCCAGCGGCCAGAGTGCGCCCATGCCTCGCCGAGCGGGC
GAGAAACGTGGAGAACAACG

Downstream 100 bases:

>100_bases
GTCTGGTGCAGCGATTGAGCTGAATTGAATCCTGCGAGCCCCGGCCATGCCGGGGCTTTCTACGTTTGAGAGTGGCGTCG
TGCGGACGATTCATTGCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKMRTSLLGMSLIGLMATSTFAQAQNYSHQQRYTEADEGRRFNDGTRVRCRNVEVQKNSTDPNRIGGTLAGAAIGGLLGN
QVGGGNGKKLATVAGAVAGGAAGRTIQGNRQQANGNRQVERVCERR

Sequences:

>Translated_126_residues
MKMRTSLLGMSLIGLMATSTFAQAQNYSHQQRYTEADEGRRFNDGTRVRCRNVEVQKNSTDPNRIGGTLAGAAIGGLLGN
QVGGGNGKKLATVAGAVAGGAAGRTIQGNRQQANGNRQVERVCERR
>Mature_126_residues
MKMRTSLLGMSLIGLMATSTFAQAQNYSHQQRYTEADEGRRFNDGTRVRCRNVEVQKNSTDPNRIGGTLAGAAIGGLLGN
QVGGGNGKKLATVAGAVAGGAAGRTIQGNRQQANGNRQVERVCERR

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=80, Percent_Identity=45, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 13349; Mature: 13349

Theoretical pI: Translated: 11.61; Mature: 11.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMRTSLLGMSLIGLMATSTFAQAQNYSHQQRYTEADEGRRFNDGTRVRCRNVEVQKNST
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEECEEEECCCC
DPNRIGGTLAGAAIGGLLGNQVGGGNGKKLATVAGAVAGGAAGRTIQGNRQQANGNRQVE
CHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
RVCERR
HHHCCC
>Mature Secondary Structure
MKMRTSLLGMSLIGLMATSTFAQAQNYSHQQRYTEADEGRRFNDGTRVRCRNVEVQKNST
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEECEEEECCCC
DPNRIGGTLAGAAIGGLLGNQVGGGNGKKLATVAGAVAGGAAGRTIQGNRQQANGNRQVE
CHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
RVCERR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]